BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887665

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G43910.1 | Symbols:  | P-loop containing nucleoside triphosp...   283    1e-75


> AT1G43910.1 | Symbols:  | P-loop containing nucleoside triphosphate 
hydrolases superfamily protein | chr1:16655884-16657658 
REVERSE LENGTH=1624
Length=1624

 Score =  283 bits (153),  Expect = 1e-75
 Identities = 322/401 (80%), Gaps = 22/401 (5%)
 Strand=Plus/Plus

Query  90   TTTCACCCTTGTGATCGAGC-ACAAATGGGGGTTTTG-CGATAATCAGACTTTCCGTGCG  147
            ||||||  ||||||| |||| ||   |||| | ||||  || |||||||| |||||||| 
Sbjct  207  TTTCACTTTTGTGATAGAGCAAC-GTTGGGAG-TTTGTTGAGAATCAGACGTTCCGTGCT  264

Query  148  GCCGAAGTTTACTTTAAGAT-GC-GTCTTGCCGGACTCTCCACCGGAC-AACTCCTCGTG  204
            || ||||||||| || |  |  | |||| |||||||| || || || | |||| || |||
Sbjct  265  GCTGAAGTTTAC-TT-ACCTACCTGTCTCGCCGGACTTTCTACAGG-CAAACTTCTTGTG  321

Query  205  GGTTCGAGTGATCTCAAGAATCCGGAGGCTGAGCCAAATCTTGGAATCCCTGTCAACACA  264
            ||||| ||| |||| |||||||| |  ||||||||||| ||||| |||||||| ||||| 
Sbjct  322  GGTTCAAGTAATCTTAAGAATCCAGCTGCTGAGCCAAAACTTGGTATCCCTGTGAACACT  381

Query  265  AAGATCGTTGATGAGTTTGAAGGGATTCATCTTGAGTGGACTCTACATTGTGTTG-AGCT  323
            |||||| ||||| | ||||||||||||||||| || |||||||| || | ||||| | | 
Sbjct  382  AAGATCATTGATAACTTTGAAGGGATTCATCTAGAATGGACTCTTCACTCTGTTGAAAC-  440

Query  324  TAAG-AGTTATC--CCTTCGAGAAACGGTACTTTAATCTT-ACTTGTAAGAAGGAGTTTC  379
            |||| || ||||  ||  ||| |||||||||||| || || || ||||||||||||||||
Sbjct  441  TAAGAAG-TATCTACC--CGAAAAACGGTACTTTCAT-TTGACATGTAAGAAGGAGTTTC  496

Query  380  GTGAGAAGATAATGACAGATTACTTGACATACATAGCGACATCAGCAGAGAAGATAATGA  439
            |||||||||||||||| |||||||| || ||| |||||| |||||| |||||||||||||
Sbjct  497  GTGAGAAGATAATGACGGATTACTTCACTTACTTAGCGAAATCAGCGGAGAAGATAATGA  556

Query  440  GACATCGTGAAAAGCTCTTCATCTACT-CTTATAGCCGAGA  479
            | ||||| || || |||   ||||| | |||||| || |||
Sbjct  557  GCCATCGCGAGAATCTCAAGATCTA-TACTTATAACCAAGA  596



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5