BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887666
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09430.1 | Symbols: | unknown protein; Has 17 Blast hits to... 948 0.0
> AT3G09430.1 | Symbols: | unknown protein; Has 17 Blast hits
to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:2901280-2903072 FORWARD LENGTH=1085
Length=1085
Score = 948 bits (513), Expect = 0.0
Identities = 584/619 (94%), Gaps = 2/619 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCGTCATCGTCACGATCGCTGGTTTCTTCCTATACCTTTGATGATAAAGACCTA 60
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1 ATGGCGTCGTCATCGTCACGATCTCTGGTTTCTTCCTACACCTTTGATGAGAAAGACCTA 60
Query 61 GAAGACGCTGATTTATGGGCGGTGATTGATTCCGCCGCCGCTGCAGCTACTATCGCCGGG 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACGACGCTGATTTATGGGCGGTGATTGATTCCGCCGCCGCTGCAGCTACTATCGCCGGC 120
Query 121 AAATCTCCGAAA-CCCTTAGCTATTAGGTATCCAAATTACAATTCTCCTCCGACGCCTGT 179
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATCTCCGAAACCCCTT-GCTATTAGGTATCCAAATTACAATTCTCCTCCGACGCCTGT 179
Query 180 TTCGTATCCTTCTCCACAGTCGAAGGTTCTTCAGATCCAGAATCGTAACCCTAATCTTGC 239
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 180 TTCGTATCCTTCTCCACAGTCGAAAATTCTTCAGATCCCCAATCGTAACCCTAATCTTGG 239
Query 240 CCGAGGATTGAATGAGGAGTCTACGCGTCCGAACAAAATGGCTAGATCTCGCGTCTTGTC 299
|||||||||||| |||||||||| ||||||| ||||||||| ||||||||| |||||||
Sbjct 240 CCGAGGATTGAACGAGGAGTCTAATCGTCCGAGCAAAATGGCCAGATCTCGCATCTTGTC 299
Query 300 TGAGGTGAAGAGTGAGAGTCCGATGGCTCTTGTTACGACGGCGCACCGGAATTTGACCCC 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 TGAGGTGAAGAGTGAGACTCCGATGGCTCTTGTTACGACGGCGCACCGGAATTCGACCCC 359
Query 360 GAATATCATCAATTCGACTAAGTTTTCTTCTCCGGAGAGTTACTTGTCGCCTGGAATTCG 419
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 360 GAATATCATCAATTCGACGAAGTTTTCTTCGCCGGAGAGTTACTTGTCGCCTGGGATTAG 419
Query 420 GCAGTCTACTCCCTTTGCGGAGGTTTCTCCGTCAGCGAGCTGTGTTAAGAACGATCCGGT 479
||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 ACAGCCTACGCCTTTTGCGGAGGTTTCTCCGTCAGCGAGCTGTGTTAAGAACGATCCGAT 479
Query 480 TAATGAGATGCGACATAGCTTGTCTGGGAGCTTTCCTTCTGCTACTCTGTTCAAGGAGTA 539
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 480 TAATGAGATGCGACATAGCTTGTCCGGTAGCTTTCCTTCTGCTACTCTGTTCAAGGAGTA 539
Query 540 CCAGAATACAGCAATGGCGATTCTAGAAAAATCTGACTACACGATGATCTCAGGGAAGGC 599
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 540 CCAGAATACAGCAATGGCGATTCTAGAGAAATCTGATTACACGATGATATCAGGGAAGGC 599
Query 600 ATACATTAAAAAGTCAGGT 618
|||||| ||||||||||||
Sbjct 600 ATACATCAAAAAGTCAGGT 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5