BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887668
Length=510
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23955.2 | Symbols: | F-box family protein | chr3:8655023-8... 603 7e-172
AT2G05300.1 | Symbols: | pseudogene of the F-box protein famil... 549 9e-156
> AT3G23955.2 | Symbols: | F-box family protein | chr3:8655023-8657439
REVERSE LENGTH=1618
Length=1618
Score = 603 bits (326), Expect = 7e-172
Identities = 445/500 (89%), Gaps = 18/500 (4%)
Strand=Plus/Plus
Query 23 ACATG-TTCTCGTCATTGGA-TTCGAGGGTTAGAGATATGACGATATGTGCA-AACACTT 79
||||| |||||| | ||||| ||||||||| ||||||||||||||||||||| || ||||
Sbjct 882 ACATGTTTCTCG-C-TTGGATTTCGAGGGTCAGAGATATGACGATATGTGCACAA-ACTT 938
Query 80 TCAAGCTCATGCAGCTTTACTCAGTATTTAAACCGCTACCTCAATTTGGTTACATGTCCA 139
|||||||||| || | |||||||| || | | |||||||||||| |||||||||||||
Sbjct 939 TCAAGCTCATCCATCATTACTCAGAATCTGTTCAGCTACCTCAATTCGGTTACATGTCCA 998
Query 140 GTCTATACGTTACTCTCACTGCAT-ATGATTTGAAATGGTTTCCAATCTTTC-T--GAGT 195
|||||||| ||||||||| ||||| | ||||||||||||||||||||||||| | ||||
Sbjct 999 GTCTATACATTACTCTCAATGCATCA-GATTTGAAATGGTTTCCAATCTTTCTTAGGAGT 1057
Query 196 AGCCCGAATCTGAAATCCCTCATCTT-G-GAACGGATTGG--TGGTTCTTTCCATCAACT 251
| |||||||||||||||||||||||| | | | ||| || |||||||| |||||||||
Sbjct 1058 ATCCCGAATCTGAAATCCCTCATCTTAGTG-ATGGAACGGACTGGTTCTTCCCATCAACT 1116
Query 252 GTCTCCCAAGGCGATGGAACGAGTTAGTATTTCATCTGTGACTGAGTGTTTGCTATCGTC 311
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1117 GTCTCCCAAGGCGATCAAACGAGTTAGTATTTCATCTGTGCCTGAGTGTTTGCTATCGTC 1176
Query 312 CCTCGAGTTTGTTGATTTCAAATCCCCAATTTG-GGAACTTGCTCCAGAAATGAAGCTCG 370
||||||||||||||| |||||| |||||||||| ||| ||||||||||| |||| ||| |
Sbjct 1177 CCTCGAGTTTGTTGAATTCAAAGCCCCAATTTGTGGA-CTTGCTCCAGAGATGATGCTAG 1235
Query 371 TATGGTACTTCCTAGAGAATTCTCCCACCCTCAAGAAACTCACTCTACATTTGAAGTCTC 430
||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||
Sbjct 1236 TATGGTACTTCCTAGAGAACTCTCCCACACTCAAGAAACTCACTCTACGTTTGAAGTCTC 1295
Query 431 ATTCAATAACAGATGACTTCATCAAAAAACTCCTCAAAATCCCAAGATGCTCTACCGAAT 490
|||||| || ||||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct 1296 ATTCAACAAAAGATGACTTTGTCAAGAAACTCCTCAAAATCCCAAGATGCTCTACAGAAT 1355
Query 491 GTGAAGTTGTCTTTCTTTGA 510
||||||| |||||||||||
Sbjct 1356 GTGAAGTCATCTTTCTTTGA 1375
> AT2G05300.1 | Symbols: | pseudogene of the F-box protein family
| chr2:1931242-1933010 FORWARD LENGTH=1610
Length=1610
Score = 549 bits (297), Expect = 9e-156
Identities = 426/485 (88%), Gaps = 22/485 (5%)
Strand=Plus/Plus
Query 22 AACATG-TTCTCGTCATTGGA-TTCGAGGGTTAGAGATATGACGATATGTGCAAACACTT 79
|||||| |||||| | ||||| |||||||||||||||||||| |||||||||| ||||||
Sbjct 832 AACATGTTTCTCG-C-TTGGATTTCGAGGGTTAGAGATATGAAGATATGTGCACACACTT 889
Query 80 TCAAGCTCATGCAGCTTTACTCAGTAT-TTAAACCGCTACCTCAATTTGGTTACATGTCC 138
|||||||||| || | ||||||| || || ||||||||||| ||||||||||||||||
Sbjct 890 TCAAGCTCATCCATCGATACTCAGAATCTT-CACCGCTACCTCGATTTGGTTACATGTCC 948
Query 139 AGTCTATACGTTACTCTCACTGCAT-ATGATTTGAAATGGTTTCCAATCTTTC-T--GAG 194
|||||||| |||||||||| ||||| | || ||| |||||||||||||||||| | |||
Sbjct 949 AGTCTATATGTTACTCTCAATGCATCA-GAATTGGAATGGTTTCCAATCTTTCTTAGGAG 1007
Query 195 TAGCCCGAATCTGAAATCCCTCATCTTGGAACGGATTGGTGGTTCTTTC-CATCAACTGT 253
|||||| ||||||||||| ||||||||||| |||| ||||||| ||| |||||||| |
Sbjct 1008 TAGCCCAAATCTGAAATCTCTCATCTTGGAGCGGA---GTGGTTC-TTCTCATCAACTCT 1063
Query 254 CTCCCAAGGCGATGGAACGAGTTAGTATTTCATCTGTGA-CTGAGTGTTTGCTATCGTCC 312
||| |||||||||||||||||||||||| |||||||| | |||||||||||||| | |||
Sbjct 1064 CTCGCAAGGCGATGGAACGAGTTAGTATGTCATCTGT-ACCTGAGTGTTTGCTAACATCC 1122
Query 313 CTCGAGTTTGTTGATTTCAAATCCCCAATTTG-GGAACTTGCTCCAGAAATGAAGCTCGT 371
|| ||||||||||| |||||| | |||||||| || ||||| |||||| |||| ||| ||
Sbjct 1123 CTAGAGTTTGTTGAATTCAAAGCACCAATTTGCGG-ACTTGGTCCAGAGATGATGCTAGT 1181
Query 372 ATGGTACTTCCTAGAGAATTCTCCCACCCTCAAGAAACTCACTCTACATTTGAAGTCTCA 431
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1182 ATGGTACTTCCTAAAGAATTCTCCCACCCTCAAGAAACTCACTCTACCTTTGAAGTCTCA 1241
Query 432 TTCAAT-AACAGATGACTTCATCAAAAAACTCCTCAAAATCCCAAGATGCTCTACCGAAT 490
||||| || ||||||||| |||| ||||||||| ||||||| ||||||||||||||||
Sbjct 1242 TTCAACCAA-AGATGACTTTTTCAAGAAACTCCTCGAAATCCCGAGATGCTCTACCGAAT 1300
Query 491 GTGAA 495
|||||
Sbjct 1301 GTGAA 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24363561295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5