BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887669
Length=384
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39880.1 | Symbols: MYB25, AtMYB25 | myb domain protein 25 |... 340 4e-93
> AT2G39880.1 | Symbols: MYB25, AtMYB25 | myb domain protein 25
| chr2:16647945-16649479 REVERSE LENGTH=1104
Length=1104
Score = 340 bits (184), Expect = 4e-93
Identities = 221/239 (92%), Gaps = 2/239 (1%)
Strand=Plus/Plus
Query 91 GCAGTCGAGGCAGAGCTCGCCGAGTTAGCGAAAAGTGACTCGAACGGCGGAGGAAAGAGT 150
||||| |||||||||||||||||| |||||||||| ||| |||||||||| |||||||||
Sbjct 82 GCAGTTGAGGCAGAGCTCGCCGAGCTAGCGAAAAGCGACGCGAACGGCGGCGGAAAGAGT 141
Query 151 AAAGTGAAAGGATCTTGGTCT-CCGGAGCAAGATGAGGCTCTCACGAGGCTTGTGAAAAA 209
|||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 142 AAAGTGAAAGGACCTTGGT-TGCCGGAGCAAGATGAGGCTCTCACGAGGCTTGTGAAAAT 200
Query 210 GTGTGGGCCGAGAAATTGGACTCTGATGTCTCGTGGAATCCCAGGTCGTTCTGGTAAATC 269
|||||||||||| || |||| ||| || || ||||||||||||||||| |||||||||||
Sbjct 201 GTGTGGGCCGAGGAACTGGAATCTAATCTCCCGTGGAATCCCAGGTCGCTCTGGTAAATC 260
Query 270 TTGCCGATTGCGTTGGTGTAATCAGCTCGATCCTAACCTCAAACGAAAACCTTTCTCTG 328
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 261 TTGCCGATTACGTTGGTGTAATCAGCTCGATCCTATCCTCAAACGAAAACCTTTCTCTG 319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18096389640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5