BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887678
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) fam... 1118 0.0
> AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
| chr3:2300579-2308305 REVERSE LENGTH=3885
Length=3885
Score = 1118 bits (605), Expect = 0.0
Identities = 767/842 (91%), Gaps = 24/842 (3%)
Strand=Plus/Plus
Query 10 AAGTTTGGAGAAGATGAGAATGTGGA---C--G-TCGAGCTAGAGCTATGTCTTTCCCTG 63
||||||| |||||||||||||||||| | | ||||||| ||||||||||||||||||
Sbjct 10 AAGTTTGTAGAAGATGAGAATGTGGAGGTCGAGCTCGAGCTCGAGCTATGTCTTTCCCTG 69
Query 64 GGAGGTCCTTTCAAGAAAACAGAGAAATCTAAACCAATAGGACCATCTAACGCCGTCGAA 123
|||||||||||||||||||| |||||||||||| || | |||| |||||||||||||| |
Sbjct 70 GGAGGTCCTTTCAAGAAAACGGAGAAATCTAAAACATTTGGACAATCTAACGCCGTCGGA 129
Query 124 TGCGCA-AAGGGTACCGGCGTTAATCTTGA-GG-ATGAAACGACGAATGTGACGAGGATA 180
| || | |||| || ||||||||||||||| || | | ||||||||||||||||||||||
Sbjct 130 TTCG-AGAAGGATAACGGCGTTAATCTTGACGGCA-G-AACGACGAATGTGACGAGGATA 186
Query 181 aaggaaacgcggaagaagcgggaggcgaagcagcagcagagaagcggagaagaagaagag 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 187 AAGGAAACACGGAAGAAGCGGGAGGCGAAGCAGCAGCAGAGAAGCGGAGAAGAAGGAGAG 246
Query 241 tgcaagaggatgagaaCAGAATGTAACGGAGTTACTAACGGCGAGGATATGGATTTGAGC 300
||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||
Sbjct 247 TGCAAGAGGATCAGAACAGAATATAACGGAGTTAGTAACGGCGATGATATGGATTTGAGC 306
Query 301 TTTAGCAAAATGGGTAACGGTTACGGGTCGGGTCAACTTAAGGAAAACCGTAAAGACGTT 360
| || ||| ||| ||||||||||||||||||||| ||| ||||||| | |||||||||||
Sbjct 307 TCTATCAACATGTGTAACGGTTACGGGTCGGGTCGACTCAAGGAAAGCAGTAAAGACGTT 366
Query 361 ACGATTGGGTCACCCATTTGCACCTCCTCCGACGTATCCGATCCCAGCAGCTCTTCTCGC 420
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 367 ACGATTGGGTCACCCATTTGCACCTCCTCCTCCGTATCCGATCCTAGCAGCTCTTCTCGC 426
Query 421 CACGAAGGTGGAAGTGGCGATATTGGGGCACAATCTGGCCAAACCAAACCGGTTGGACCT 480
|| ||||||||||||||||| |||||||||||||||||||||||||||| |||| || ||
Sbjct 427 CAAGAAGGTGGAAGTGGCGACATTGGGGCACAATCTGGCCAAACCAAACAGGTTAGATCT 486
Query 481 CCGGTTAACAACATTGGGATTGGTACAGAGCAAACCGTGCATAGCACAGACGGTTCAAAA 540
||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 487 CCGGTTAACAACATTCTGACCGGTACAGAGCAAACCGTGCATAACACAGACGGTTCAAAA 546
Query 541 GATGCGGTGGTAGTGGAGACCCAAGCATTGTCCAACTCT---GTAACCAAAAAGACTGGG 597
|| |||| || | |||||| || |||||||||| ||||||||| ||| ||||
Sbjct 547 GACGCGG----AG---A--CCCAAGAATGGTCCAACTCTTCTGTAACCAAAGAGAGTGGG 597
Query 598 AAGCCACCAAAACCGCATACCAACAGTACCGGTAACGGCAGTTTGCTTCCGTTTGCTCAG 657
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 598 AAGCCGCCAAAACCGCATACCAACAGTAACGGTAACGGCAGTTTGCTTCCGTTTGCTCAG 657
Query 658 ATGCCTTGCGTGACTAGCACCGGCAACGGTCCCGAGGGCAAAACCGTAAATGGCTTTCTA 717
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 658 ATGCCTTGCGTGACTAGCACCGGTAACGGTCCCGAGGGCAAAACCGTAAATGGTTTTCTA 717
Query 718 TACCGGTACTCAAAATCAGAGATCAGTATAATCTGTGTCTGCCATGGAACGTCTTTCTCG 777
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 718 TACCGTTACTCAAAATCAGAGATCAGTATAATCTGCGTCTGCCATGGAACGTCTTTCTCG 777
Query 778 CCGGCTGAGTTCATCGTTCACGCCGGTGGGACTAATGTGTCACAGCCGTTGAGGCATATA 837
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 778 CCGGCTGAGTTCATCGTTCACGCCGGTGGGACTAATGTGTCGCATCCGTTGAGGCATATA 837
Query 838 AC 839
||
Sbjct 838 AC 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5