BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887692

Length=186
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G21530.1 | Symbols:  | Transducin/WD40 repeat-like superfami...   268    9e-72


> AT4G21530.1 | Symbols:  | Transducin/WD40 repeat-like superfamily 
protein | chr4:11450556-11456007 FORWARD LENGTH=2666
Length=2666

 Score =  268 bits (145),  Expect = 9e-72
 Identities = 149/151 (99%), Gaps = 0/151 (0%)
 Strand=Plus/Plus

Query  1    ATGTCGGAAATGGCGAGTGACGAGGAAGAAAATATCATTCCTTTCCAGCTACAGTTCGAC  60
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  188  ATGTCGGAAATGGCGAGTGACGAGGAAGAAAATATCATTCCTTTCCAGCTCCAGTTCGAC  247

Query  61   AAGCCCATACCTTTTCAGATTAAGATAGCTGAGTGGAACCCGGAGAAGGATTTACTGGCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  248  AAGCCCATACCTTTTCAGATTAAGATAGCTGAGTGGAACCCGGAGAAGGATTTACTGGCA  307

Query  121  ATGGTTACTGAGGACTCAAAGATTTTGCTGC  151
            ||||||||||||||||| |||||||||||||
Sbjct  308  ATGGTTACTGAGGACTCCAAGATTTTGCTGC  338



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8199120213


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5