BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887694
Length=441
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50340.1 | Symbols: | Plant invertase/pectin methylesterase... 475 1e-133
AT1G50325.1 | Symbols: | Plant invertase/pectin methylesterase... 464 3e-130
> AT1G50340.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:18647376-18647849 REVERSE
LENGTH=474
Length=474
Score = 475 bits (257), Expect = 1e-133
Identities = 375/431 (87%), Gaps = 11/431 (3%)
Strand=Plus/Plus
Query 4 GTCAATGCGTCATTTTGCTATGAGTTCATGAAATCA-TACCCTCAAATTGCAACAATGGA 62
|||||| ||||||||||||||||||||||||||||| | |||||||||||||||| ||||
Sbjct 7 GTCAATACGTCATTTTGCTATGAGTTCATGAAATCAAT-CCCTCAAATTGCAACATTGGA 65
Query 63 TATTTCTGATCTCGCCAAATTTTTGATCAATTATGATTTTCAAAAAACCTTAGATCTGAT 122
||||| ||||||| |||||||| |||||||||| |||||||||| ||| |||||| |||
Sbjct 66 TATTTATGATCTCACCAAATTTCTGATCAATTACGATTTTCAAATAACATTAGATTTGAC 125
Query 123 GAAGCATTTCCAGTCACTCACAAACAGCACAACCGATCGCAGTTCTAAGGAATCCTATAA 182
|||||||||||||||||||||||||| |||||| |||||||||||||| || ||||||||
Sbjct 126 GAAGCATTTCCAGTCACTCACAAACAACACAACAGATCGCAGTTCTAAAGATTCCTATAA 185
Query 183 GATATGTTCAGAGCTTTTTAGCCTTGGT-ATCCATTTGCTTGAGTCTTCTCTTAAAGCTT 241
| |||||| ||| |||||||| ||| | |||| |||||| | ||||||||||||
Sbjct 186 GTTATGTTTAGATCTTTTTAGTCTTATTGATCC----GCTTGAAACCGCTCTTAAAGCTT 241
Query 242 TGGCAACCAATGACTATGACACCTTAGACAGGAACGTTAGTGATATGTCTGCC-TATGCG 300
| ||| |||||||||||||||| ||| ||| ||||||| ||| ||||||| | |||||
Sbjct 242 TAGCAGCCAATGACTATGACACTTTAAACACGAACGTTGGTGTTATGTCT-CAATATGCA 300
Query 301 GAGGAATGTGGAAGCGAGCTGTCAAGTGTCATCAAGCCTATTCCACAGCTCTTA-AAAGG 359
||||||||||||||||||||||||||| |||||||||||||| || | || || |||||
Sbjct 301 GAGGAATGTGGAAGCGAGCTGTCAAGTATCATCAAGCCTATTTCAAAACT-TTCGAAAGG 359
Query 360 GGTTTCTATTGTCGAAAATGTAGGTCACATTGTTCTTGTAATTTTGGAATGTTTTCTAAG 419
|||||||||||||||||||||| | |||||||||||||||||| ||||| |||| ||||
Sbjct 360 GGTTTCTATTGTCGAAAATGTATCTGACATTGTTCTTGTAATTTCGGAATATTTTTTAAG 419
Query 420 AAAAGAAAAAA 430
|||| ||||||
Sbjct 420 AAAAAAAAAAA 430
> AT1G50325.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:18639874-18640488 REVERSE
LENGTH=615
Length=615
Score = 464 bits (251), Expect = 3e-130
Identities = 379/438 (87%), Gaps = 19/438 (4%)
Strand=Plus/Plus
Query 4 GTCAATGCGTCATTTTGCTATGAGTTCATGAAATCATACC-CTCAAATTGCAACAATGGA 62
||||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||
Sbjct 145 GTCAATGCGTCATTTTGCTATGAGTTCATGAAATCAT-CCACTCAAGTTGCAACATTGGA 203
Query 63 TATTTCTGATCTCGCCAAATTTTTGATCAATTATGATTTTCAAAAAACCTTAGATCTGAT 122
|| || ||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 204 TACTTATGATCTCGCCAAATTTTTGATCAATTATGATTTTCAAAACACCTTTGATCTAAT 263
Query 123 GAAGCATTTCCAGTCACTCACAAACAGCACAACCGATCGCAGTTCTAAGGAATCCTATAA 182
||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| |
Sbjct 264 AAAGCATTTCCAGTCACTCACAAACAGCACAACCGATCCCAGTTCTAAGGGTTCTTATGA 323
Query 183 GATATGTTCAGAGCTTTTTAGCCTTGGTATCCATT-TGCTTGAGTCTTCTCTTAAAGCTT 241
| |||||| | | ||||||| ||| ||| || | ||||| | | ||||||||||
Sbjct 324 GCTATGTTTACATCTTTTTAATCTT---ATCAATCCT-CTTGAAACCGCACTTAAAGCTT 379
Query 242 TGGCAACCAATGACTATGACACCTTAGACAGGAACGTT-AGTGATATGTCTGCCTATGCG 300
|||||||||||||||||||||| ||| ||||||| ||| | || ||||||| | || ||
Sbjct 380 TGGCAACCAATGACTATGACACTTTAAACAGGAATGTTGA-TGCTATGTCT-CA-ATTCG 436
Query 301 -GA-GGAATGTGGAAGCGAGCTGTCAAGTGTCATCAAGCCTATTCCACAGCTCTT-AAAA 357
|| |||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 437 CGATGGAATGTGAAAGCGAGCTGTCAAGTGTCATCAAGCCTATTCCAAAGCTCTTGAAAA 496
Query 358 GGGGTTTCTATTGTCGAAAATGTAGGTC--ACATTGTTCTTGTAATTTTGGAATGTTTTC 415
||| ||||||| |||||||||||| || ||||| || |||||||| |||||||||||
Sbjct 497 GGG-TTTCTATCGTCGAAAATGTA--TCCGACATTATTTTTGTAATTGTGGAATGTTTTT 553
Query 416 TAAGAAAAGAAAAAACTT 433
||||||||||| ||||||
Sbjct 554 TAAGAAAAGAAGAAACTT 571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20961651333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5