BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887699

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56960.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bin...   446    6e-125


> AT5G56960.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding 
family protein | chr5:23038703-23041174 REVERSE LENGTH=1401
Length=1401

 Score =  446 bits (241),  Expect = 6e-125
 Identities = 271/285 (95%), Gaps = 3/285 (1%)
 Strand=Plus/Plus

Query  1    ATGGATGGATATTACAATGAAGCTTCTGAAGAACcttcttcttcttcttcttcCGGAAGT  60
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct  40   ATGGATGGATATTACAATGAAGCTTCTGAAGAACCTTCTTCGTCTTCTTCTTCTGGAAGT  99

Query  61   TTAGCTAGAAGCTTATTCCATGAGTATCGCCAATCCGTTATCCCACTCCAAAAT---CAT  117
            |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||   |||
Sbjct  100  TTAGCTAGGAGCTTGTTCCATGAGTATCGCCAATCCGTTATCCCGCTCCAAAATGGGCAT  159

Query  118  GTACCAAGCATGGCGTTCATGAACAATCTTCCATACGTAGAGATTCGACCACAAGAGATT  177
            || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct  160  GTGCCAAGCATGGCGTTCATGAACAATCTTCCATACGTAGAAATTCGACCACAAGAGAGT  219

Query  178  CAAAGACTTGCTTTTAACGACGCACAACGTCTATTCTATCAGATGAAAATAGAAGCAAGT  237
            ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct  220  CAAAGACTTGCTTTTAACGACACACAACGTCTCTTCTATCAGATGAAAATTGAAGCAAGT  279

Query  238  CTTCGAGAATGGTTCCCTGAAGATTTCAATAGAAAGTCTTCTCCG  282
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  280  CTTCGAGAATGGTTCCCTGAAGATTTCAATAGAAAGTCTTCTCCG  324



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12969079242


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5