BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887710

Length=831
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G52300.1 | Symbols: RD29B, LTI65 | CAP160 protein | chr5:212...   582    1e-165
  AT5G52310.1 | Symbols: COR78, LTI78, RD29A, LTI140 | low-temper...   100    2e-20 


> AT5G52300.1 | Symbols: RD29B, LTI65 | CAP160 protein | chr5:21237056-21239529 
FORWARD LENGTH=2134
Length=2134

 Score =  582 bits (315),  Expect = 1e-165
 Identities = 406/450 (90%), Gaps = 5/450 (1%)
 Strand=Plus/Plus

Query  383   GTGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTAGTCGGATGAAAGTGACTGATG  442
             |||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct  928   GTGGAGAAGCTGGAGTACCAGAGATTGCTGAGTCTCTTGGTAGAATGAAAGTGACTGATG  987

Query  443   AGTCTCCTGATCAGAAATCAAGACAAGGATTTGGAGAAGACTTACCGACGAGAAGCCAAG  502
             |||||||||||||||||||||||||||||   | ||||||||| |||||||||||||| |
Sbjct  988   AGTCTCCTGATCAGAAATCAAGACAAGGACGCGAAGAAGACTTTCCGACGAGAAGCCATG  1047

Query  503   AATTTGGTCTGAAGAACGAATCTGATATCAGCAAGGATTCTCCGGCAAGACTTGGAGGAG  562
             | |||| ||||||||| ||||||||||||| |||| |||||||||||||| ||||||| |
Sbjct  1048  AGTTTGATCTGAAGAAGGAATCTGATATCAACAAGAATTCTCCGGCAAGATTTGGAGGGG  1107

Query  563   AATCAAGAGCTGGTCTCGG-GGAAGATTTTCAGAGAAGAAGTGATGATGTGAAAGCAGAG  621
             |||||| ||||||  | || ||||||||||| || |||| | | ||||||||||| ||||
Sbjct  1108  AATCAAAAGCTGGGAT-GGAGGAAGATTTTCCGACAAGA-G-G-TGATGTGAAAGTAGAG  1163

Query  622   ACTGGGTTGGGAAGAGACTTACCGACCGGAACTCATGATCAGTTCTCACCGGAACTATCT  681
             | ||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  1164  AGTGGATTGGGAAGAGACTTACCGACGGGAACTCATGATCAGTTCTCACCAGAACTATCT  1223

Query  682   CGTCCTAAAGAGAGAGATGATTTTGAGGAAACCAGAGATGAGACGAAACAGGAGAGGAAA  741
             ||||| |||||||||||||||| ||||||||||| ||||||| ||| ||| ||||  |||
Sbjct  1224  CGTCCCAAAGAGAGAGATGATTCTGAGGAAACCAAAGATGAGTCGACACATGAGACAAAA  1283

Query  742   CCGAGCACCTACACAGAGCAGTTAGCTTCAGCTACATCAGCCATAACCAACAAAGCTATA  801
             || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1284  CCAAGCACCTACACAGAGCAGTTAGCTTCAGCTACATCAGCCATAACTAACAAAGCTATA  1343

Query  802   GCGGCGAAGAACGTCGTCGCCTCAAAGCTA  831
             || || ||||||||||| ||||||||||||
Sbjct  1344  GCCGCAAAGAACGTCGTTGCCTCAAAGCTA  1373


 Score =  427 bits (231),  Expect = 7e-119
 Identities = 288/315 (91%), Gaps = 5/315 (2%)
 Strand=Plus/Plus

Query  51   GAAGATCAAGAACAGTCTCACTAGACATGGCAATGGTCATGATCACGATGTTGAAGAAGA  110
            ||| ||||||||||||||||||| |||||| |||||||||||||||||||| ||||| ||
Sbjct  284  GAAAATCAAGAACAGTCTCACTAAACATGGAAATGGTCATGATCACGATGTGGAAGATGA  343

Query  111  AGAAGATGAGTATGACGAGCAAGACCCAGAAGAGCACGGAGCACCA---TATGAATCCTC  167
             || ||||||||||||||||||||||||||||  ||||| ||||||   |||||||||||
Sbjct  344  TGATGATGAGTATGACGAGCAAGACCCAGAAGTTCACGGCGCACCAGTGTATGAATCCTC  403

Query  168  TGCCGTAAGAGGTGGTGTAACGGGTAAACCTGAGTCT-TTAAGTCATACCGGAGAAACTA  226
            |||||| |||||||||||||||||||||||| ||||| || |||||| ||||||||||||
Sbjct  404  TGCCGTGAGAGGTGGTGTAACGGGTAAACCTAAGTCTCTT-AGTCATGCCGGAGAAACTA  462

Query  227  ATGTTCCAGCACCGGAGGAGATTGTTCCTCCAGGAACAAAGGTTTTTCCTGTCGTGTCTT  286
            ||||||| ||| |||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct  463  ATGTTCCGGCATCGGAGGAGATTGTTCCTCCAGGGACAAAAGTTTTTCCTGTCGTGTCTT  522

Query  287  CCGAGCACACCAAACCCATTGAGCCTGTTTCATTACAAGATACCTCTTACGGACATGAGG  346
            | || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  523  CTGACCACACCAAACCCATTGAGCCTGTATCATTACAAGATACCTCTTACGGACATGAGG  582

Query  347  CACTGTCTGCTCCTG  361
            ||||| ||| |||||
Sbjct  583  CACTGGCTGATCCTG  597


> AT5G52310.1 | Symbols: COR78, LTI78, RD29A, LTI140 | low-temperature-responsive 
protein 78 (LTI78) / desiccation-responsive 
protein 29A (RD29A) | chr5:21240849-21243613 FORWARD LENGTH=2500
Length=2500

 Score =  100 bits (54),  Expect = 2e-20
 Identities = 95/114 (83%), Gaps = 5/114 (4%)
 Strand=Plus/Plus

Query  394  GGAGTACCAGAGATTGCTGAGTCTCTTAGTCGGATGAAAGTGACTGATGAGTCTCCTGAT  453
            |||||||| ||||||||||||||| || ||   ||| |||||||||||||||||||||||
Sbjct  795  GGAGTACCGGAGATTGCTGAGTCTTTTGGTAATATGGAAGTGACTGATGAGTCTCCTGAT  854

Query  454  CAGAAATCAAGACAAGGATTTGGA-GAAGACTTACCGACGAGAAGCCAAGAATT  506
            |||||  || |||||   |||| | || |||||  ||||||||||| |||||||
Sbjct  855  CAGAAGCCAGGACAA---TTTGAAAGA-GACTTGTCGACGAGAAGCAAAGAATT  904



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40488722482


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5