BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg887716 Length=345 Score E Sequences producing significant alignments: (Bits) Value AT3G52800.1 | Symbols: | A20/AN1-like zinc finger family prote... 340 4e-93 AT2G36320.1 | Symbols: | A20/AN1-like zinc finger family prote... 171 5e-42 > AT3G52800.1 | Symbols: | A20/AN1-like zinc finger family protein | chr3:19569311-19570682 FORWARD LENGTH=1129 Length=1129 Score = 340 bits (184), Expect = 4e-93 Identities = 242/267 (91%), Gaps = 15/267 (6%) Strand=Plus/Plus Query 1 ATGGCGGAAGAACATCGATGTCAGACATCAGAAAGCAACCGTCTCTGTGTTAACAACAGT 60 ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 253 ATGGCGGAAGAGCATCGATGTCAGACACCAGAAAGCAACCGTCTCTGTGTTAACAACTGT 312 Query 61 GGCTTCCTCGGCAGCTCCGCCACCATGAATCTCTGTTCTAATTGCTACGGCGATCTCTGT 120 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 313 GGCTTCCTCGGCAGCTCCGCCACCATGAATCTCTGTTCTAATTGTTACGGCGATCTTTGT 372 Query 121 CTCAAACAACAACAACAATCCTCC---ATCAAATCCACCGTCGAATCTTCCCTCTCCGTA 177 |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| Sbjct 373 CTCAAACAACAACAACAATCCTCCTCCATCAAATCCACCGTTGAATCTTCCCTCTCTGTA 432 Query 178 TCTCCTCC-T--TCATCATCATCGGAGATTGCTTCCATATCTTCTCCGATCATCCCTCCT 234 |||||||| | ||||||||||||||||| || | | ||| | | ||||||||||||| Sbjct 433 TCTCCTCCGTCGTCATCATCATCGGAGAT--CT-C--T-TCT-C-C-GATCATCCCTCCT 483 Query 235 CTCCTTAAAACTCCCTCCGTCAAGCTA 261 |||||||||| ||| || ||||||||| Sbjct 484 CTCCTTAAAAATCCATCAGTCAAGCTA 510 > AT2G36320.1 | Symbols: | A20/AN1-like zinc finger family protein | chr2:15228788-15230496 FORWARD LENGTH=1533 Length=1533 Score = 171 bits (92), Expect = 5e-42 Identities = 148/175 (85%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 1 ATGGCGGAAGAACATCGATGTC-AGACATCAGAAAG-CAACCGTCTCTGTGTTAACAACA 58 |||||||||||||||||||| | |||| | ||| | | |||||||||| ||||||||| Sbjct 425 ATGGCGGAAGAACATCGATG-CGAGACGCCTGAAGGTC-ACCGTCTCTGCGTTAACAACT 482 Query 59 GTGGCTTCCTCGGCAGCTCCGCCACCATGAATCTCTGTTCTAATTGCTACGGCGATCTCT 118 | || ||| |||| ||||| || || |||||||| ||||| || || ||||||||||||| Sbjct 483 GCGGTTTCTTCGGAAGCTCAGCGACAATGAATCTATGTTCAAACTGTTACGGCGATCTCT 542 Query 119 GTCTCAAACAACAACAACAATCCTCCATCAAATCCACCGTCGAATCTTCCCTCTC 173 |||||||||||||||||||| | ||||| ||||| ||||||||||| || ||||| Sbjct 543 GTCTCAAACAACAACAACAAGCTTCCATGAAATCAACCGTCGAATCATCTCTCTC 597 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16135947429 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5