BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887716

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G52800.1 | Symbols:  | A20/AN1-like zinc finger family prote...   340    4e-93
  AT2G36320.1 | Symbols:  | A20/AN1-like zinc finger family prote...   171    5e-42


> AT3G52800.1 | Symbols:  | A20/AN1-like zinc finger family protein 
| chr3:19569311-19570682 FORWARD LENGTH=1129
Length=1129

 Score =  340 bits (184),  Expect = 4e-93
 Identities = 242/267 (91%), Gaps = 15/267 (6%)
 Strand=Plus/Plus

Query  1    ATGGCGGAAGAACATCGATGTCAGACATCAGAAAGCAACCGTCTCTGTGTTAACAACAGT  60
            ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct  253  ATGGCGGAAGAGCATCGATGTCAGACACCAGAAAGCAACCGTCTCTGTGTTAACAACTGT  312

Query  61   GGCTTCCTCGGCAGCTCCGCCACCATGAATCTCTGTTCTAATTGCTACGGCGATCTCTGT  120
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  313  GGCTTCCTCGGCAGCTCCGCCACCATGAATCTCTGTTCTAATTGTTACGGCGATCTTTGT  372

Query  121  CTCAAACAACAACAACAATCCTCC---ATCAAATCCACCGTCGAATCTTCCCTCTCCGTA  177
            ||||||||||||||||||||||||   |||||||||||||| |||||||||||||| |||
Sbjct  373  CTCAAACAACAACAACAATCCTCCTCCATCAAATCCACCGTTGAATCTTCCCTCTCTGTA  432

Query  178  TCTCCTCC-T--TCATCATCATCGGAGATTGCTTCCATATCTTCTCCGATCATCCCTCCT  234
            |||||||| |  |||||||||||||||||  || |  | ||| | | |||||||||||||
Sbjct  433  TCTCCTCCGTCGTCATCATCATCGGAGAT--CT-C--T-TCT-C-C-GATCATCCCTCCT  483

Query  235  CTCCTTAAAACTCCCTCCGTCAAGCTA  261
            |||||||||| ||| || |||||||||
Sbjct  484  CTCCTTAAAAATCCATCAGTCAAGCTA  510


> AT2G36320.1 | Symbols:  | A20/AN1-like zinc finger family protein 
| chr2:15228788-15230496 FORWARD LENGTH=1533
Length=1533

 Score =  171 bits (92),  Expect = 5e-42
 Identities = 148/175 (85%), Gaps = 4/175 (2%)
 Strand=Plus/Plus

Query  1    ATGGCGGAAGAACATCGATGTC-AGACATCAGAAAG-CAACCGTCTCTGTGTTAACAACA  58
            |||||||||||||||||||| | ||||  | ||| | | |||||||||| ||||||||| 
Sbjct  425  ATGGCGGAAGAACATCGATG-CGAGACGCCTGAAGGTC-ACCGTCTCTGCGTTAACAACT  482

Query  59   GTGGCTTCCTCGGCAGCTCCGCCACCATGAATCTCTGTTCTAATTGCTACGGCGATCTCT  118
            | || ||| |||| ||||| || || |||||||| ||||| || || |||||||||||||
Sbjct  483  GCGGTTTCTTCGGAAGCTCAGCGACAATGAATCTATGTTCAAACTGTTACGGCGATCTCT  542

Query  119  GTCTCAAACAACAACAACAATCCTCCATCAAATCCACCGTCGAATCTTCCCTCTC  173
            |||||||||||||||||||| | ||||| ||||| ||||||||||| || |||||
Sbjct  543  GTCTCAAACAACAACAACAAGCTTCCATGAAATCAACCGTCGAATCATCTCTCTC  597



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16135947429


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5