BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887721
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64210.1 | Symbols: AOX2 | alternative oxidase 2 | chr5:2568... 1064 0.0
> AT5G64210.1 | Symbols: AOX2 | alternative oxidase 2 | chr5:25683965-25685664
REVERSE LENGTH=1062
Length=1062
Score = 1064 bits (576), Expect = 0.0
Identities = 717/782 (92%), Gaps = 21/782 (3%)
Strand=Plus/Plus
Query 20 CTTTACGAGCTCTGCTTGTCTGCGGCGGAGGAAACTGTAACATGTTCGTGAGTTCTGTTT 79
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 26 CTTTACGAGTTCTGCTTGTCTGCGGCAGAGGAAACTGTAACATGTTCGTGAGTTCTGTTT 85
Query 80 CCGCCGCCTCCGTTATGAAAAGTCCGTATGAGAGAACGAAACCGATGCGAATTCATGATT 139
|| || |||| |||||||||||||||||||||| |||| |||||||||||||||||| |
Sbjct 86 CCTCCACCTCTGTTATGAAAAGTCCGTATGAGATAACGGCACCGATGCGAATTCATGACT 145
Query 140 GGTGCGGCCGTTTTGGTGATTTTAAGATTGGTTCTAAGCATGTGCAAGGAGATTTCAAAT 199
|||||||| ||||||| ||||| ||||| || |||||||||||||||||| |||| || |
Sbjct 146 GGTGCGGCGGTTTTGGCGATTTCAAGATCGGCTCTAAGCATGTGCAAGGAAATTTTAACT 205
Query 200 TGAGGTGGA-GGAGGATGAGTTCTGCATCAGCGACGGAGAATAAAGATGAAAATTCGACG 258
||||||||| || | |||||||||||||| |||| |||||| ||||||||||||| ||||
Sbjct 206 TGAGGTGGATGG-GTATGAGTTCTGCATCGGCGATGGAGAAGAAAGATGAAAATTTGACG 264
Query 259 GTGAAGAAGGATCAAAATGGCGGTGGATCGGTGGCGGTTCCAAGTTATTGGGGAATAGAG 318
|| ||||||| |||||| ||||| || || || |||||||||||||||||||||||||||
Sbjct 265 GTAAAGAAGGGTCAAAACGGCGGGGGGTCAGTAGCGGTTCCAAGTTATTGGGGAATAGAG 324
Query 319 ACAGCAAAGATGAAAATTACTCGGAAAGATGGATCGGATTGGCCTTGGAACTGTTTTATG 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 ACAGCAAAGATGAAAATTACTCGGAAAGATGGATCGGATTGGCCTTGGAACTGTTTTATG 384
Query 379 CCATGGGAGACTTATCAAGCAAATTTGTCGATAGATTTGAAGAAGCACCACGTTCCGAA- 437
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 385 CCATGGGAGACTTATCAAGCAAATCTGTCGATAGATTTGAAGAAGCACCACGTTCCGAAG 444
Query 438 -----C-C-GACAAAATCGCTTACCGGATAGTCAAGCTCCTCCGTATTCCCACAGATATA 490
| | |||||| ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 445 AATATCGCCGACAAAGTCGCTTACCGGATTGTCAAGCTCCTCCGTATTCCCACCGATATA 504
Query 491 TTTTTCCAGGCATGACCCTCACGATATGGATGCAGAGCAATGATATGCTAGAGACAGTAG 550
||||| ||| | ||| |||||||||||||||| ||||| ||||||||||||||
Sbjct 505 TTTTTTCAG--A-GAC------GATATGGATGCAGAGCGATGAT--GCTAGAGACAGTAG 553
Query 551 CCGCAGTACCAGGAATGGTCGGAGGAATGCTTCTCCACCTAAAATCAATCCGGAAATTCG 610
| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 554 CTGCAGTACCAGGAATGGTTGGAGGAATGCTTCTTCACCTAAAATCAATCCGAAAATTCG 613
Query 611 AACATAGTGGCGGTTGGATCAAAGCATTACTAGAAGAAGCAGAGAACGAGAGGATGCATC 670
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 614 AACATAGCGGCGGTTGGATCAAAGCATTACTCGAAGAAGCAGAGAACGAGAGGATGCATC 673
Query 671 TAATGACGATGATGGAGTTAGTCAAACCCAAATGGTACGAGCGTCTTCTAGTGATGCTTG 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 TAATGACGATGATGGAGTTAGTCAAACCCAAATGGTACGAGCGTCTTCTAGTGATGCTTG 733
Query 731 TTCAAGGAATATTCTTCAACTCTTTTCTCGTTTGTTACGTGATGTCGCCGCGGTTAGCTC 790
|||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||
Sbjct 734 TTCAAGGAATATTCTTCAACTCTTTTTTCGTTTGTTACGTGATTTCCCCGCGGTTAGCTC 793
Query 791 AT 792
||
Sbjct 794 AT 795
Score = 355 bits (192), Expect = 4e-97
Identities = 205/211 (97%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 795 GATATCGACGATGGGAAGATCGAGAATGTTGCCGCGCCCGCGATTGCTATTGATTATTGG 854
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 GATATCGACAATGGGAAGATCGAGAATGTTGCCGCGCCCGCGATTGCTATTGATTATTGG 912
Query 855 AGATTGCCTAAAGATGCTACGTTGGAAAGATGTCGTCACAGTGATTCGTGCTGATGAAGC 914
|||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct 913 AGATTGCCTAAAGATGCTACGTTG-AAAGATGTTGTAACGGTGATTCGTGCTGATGAAGC 971
Query 915 TCATCATCGAGATGTCAACCATTTTGCTTCTGACATTCGCAATCAAGGAAAAGAGTTGCG 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 TCATCATCGAGATGTCAACCATTTTGCTTCTGACATTCGCAATCAAGGAAAAGAGTTGCG 1031
Query 975 AGAAGCAGGAGCTCCGATTGGTTATCACTAA 1005
|||||||| ||||||||||||||||||||||
Sbjct 1032 AGAAGCAGCAGCTCCGATTGGTTATCACTAA 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5