BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887724
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66040.1 | Symbols: STR16 | sulfurtransferase protein 16 | c... 377 2e-104
> AT5G66040.1 | Symbols: STR16 | sulfurtransferase protein 16 |
chr5:26410520-26411355 FORWARD LENGTH=616
Length=616
Score = 377 bits (204), Expect = 2e-104
Identities = 235/249 (94%), Gaps = 6/249 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGAGGAGAGTAGAGTCCCATCATCGGTGTCGGTCACAGTCGCCCACGACCTTCTT 60
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 38 ATGGCGGAGGAGAGCAGAGTCCCATCATCGGTGTCGGTAACAGTCGCCCACGACCTTCTT 97
Query 61 CTAGCCGGCCACCGCTATCTAGACGTCA---CTCTAGAAGAGTTCAGGCAGGGACATGCC 117
|||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||
Sbjct 98 CTAGCCGGCCACCGCTATCTAGACGTCAGGACTCCAGAAGAGTTCAGCCAGGGACATGCC 157
Query 118 TGTGGGGCGATCAACGTGCCTTACATGAACCGAGGAGCATCA---ATGTCAAAGAACCCC 174
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 158 TGTGGGGCGATCAACGTGCCTTACATGAATCGAGGAGCATCAGGGATGTCAAAGAACCCC 217
Query 175 GACTTCCTGGAACAAGTGTCCTCCCATTTCGGACAATCCGACAACATCATTATTGGCTGC 234
||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 218 GACTTCCTGGAACAAGTCTCCTCCCATTTCGGACAATCCGATAACATCATTGTTGGCTGC 277
Query 235 CAGAGCGGT 243
|||||||||
Sbjct 278 CAGAGCGGT 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11008637031
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5