BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887739
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38360.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 826 0.0
> AT5G38360.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:15331711-15333625 REVERSE LENGTH=1282
Length=1282
Score = 826 bits (447), Expect = 0.0
Identities = 569/625 (91%), Gaps = 19/625 (3%)
Strand=Plus/Plus
Query 1 ATGGCGTCTTCTTCTCTTACTTCGTTCCCATGCCTTTCCTCCTTCAAAATGACGATTAAG 60
|||||||||||||| ||| | |||||||||||||| |||| |||| || | | | |
Sbjct 73 ATGGCGTCTTCTTCACTTCCCTCGTTCCCATGCCTATCCTACTTC--AA--A--A-T--G 123
Query 61 CCCATAGCAGCTCTCACCAATCCCCCAAGAACGAA-AACTCCATACGAA-CTGAAAAAGG 118
||||||||||||||||||||| |||| ||||| || | ||||||| || ||||||||||
Sbjct 124 CCCATAGCAGCTCTCACCAATTCCCCTAGAAC-AACGATTCCATAC-AACCTGAAAAAGG 181
Query 119 GGCAAAACCGTCTCTTCCACAAGCTTCCCTCTGGTCTAAAAATGGAGGTAATCGAACA-A 177
|||||| ||| || || |||||||||||||||||||||||||||||||||||||| || |
Sbjct 182 GGCAAACCCGCCTTTTGCACAAGCTTCCCTCTGGTCTAAAAATGGAGGTAATCGAGCAGA 241
Query 178 CGAAGAA-GCAAATCCGAAAGAGAGAATCCACCATTGGTGTTTGTACATGGAAGCTATCA 236
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 -GAA-AATCCAAATCCGAAAGAGAGAATCCACCATTGGTGTTTGTACATGGAAGCTATCA 299
Query 237 CGCAGCTTGGTGTTGGGCTGAACATTGGTTACCTTTCTTCTCTTCTTCTGGGTTTGATTC 296
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 CGCAGCTTGGTGTTGGGCTGAAAATTGGTTACCTTTCTTCTCTTCTTCTGGGTTTGATTC 359
Query 297 TTATGCTGTTAGTTTACTAGGTCAGGGTGAAAGTGATGATCCTTTGGGAACAGTTGCTGG 356
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 TTATGCTGTTAGTTTATTAGGTCAGGGTGAAAGTGATGAACCTTTGGGAACAGTTGCTGG 419
Query 357 AACACTTCAGACGCATGCAAGTGAAATTGCGGATTTTATCGAATTGAATCTTGGCTCTTC 416
||||||||||||||| |||||||| ||||| |||||||| |||| |||||||||||||||
Sbjct 420 AACACTTCAGACGCACGCAAGTGATATTGCAGATTTTATAGAATCGAATCTTGGCTCTTC 479
Query 417 ACCTCCTGTTCTTATTGGTCATTCTTTTGGAGGACTCATTGTTCAATATTACTTGGCAAA 476
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACCTCCTGTTCTTGTTGGTCATTCTTTTGGAGGACTCATTGTTCAATATTACTTGGCAAA 539
Query 477 TATTGTAAACAAGCAGA-CGTTAGGAACGGAAAATGCGTTTCCAGAACTTTCAGGGGTTG 535
|||||||||||||| | | ||||| |||||||||||||||||||| |||||||||| |
Sbjct 540 TATTGTAAACAAGC-GTTCATTAGGTACGGAAAATGCGTTTCCAGAGCTTTCAGGGGCGG 598
Query 536 TACTTGTTTGCTCGGTTCCACCTTCGGGTAATAGCAGCTTAGTTTTTCGTTATCTCTTCT 595
|| | |||||||||||||||||||| ||||||||| ||||||| || ||||||||||| |
Sbjct 599 TAATGGTTTGCTCGGTTCCACCTTCCGGTAATAGCGGCTTAGTGTTACGTTATCTCTTTT 658
Query 596 CTAAACCTGTGGCTGCTTTTAAGGT 620
|||||||||||||||||||||||||
Sbjct 659 CTAAACCTGTGGCTGCTTTTAAGGT 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31446576022
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5