BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887745
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45210.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 898 0.0
> AT5G45210.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18295521-18298434 FORWARD LENGTH=2094
Length=2094
Score = 898 bits (486), Expect = 0.0
Identities = 1058/1322 (80%), Gaps = 88/1322 (7%)
Strand=Plus/Plus
Query 160 GAGAA-AAGAGTTCTTGTTGTTCTTGATGATGTGCGCAATCC-AATGGA-TGCTGAGTCT 216
||||| || ||||||| |||||||||||||||||||||| || ||||| | | ||||||
Sbjct 796 GAGAAGAA-AGTTCTTTTTGTTCTTGATGATGTGCGCAA-CCTGATGGATTTC-GAGTCT 852
Query 217 TTCCTAGGAGGATTTGATCATTGTTTTGGTCCC-GAAAGTTTAATAATCATAACATCCCG 275
||||| |||||| |||| | | || | ||| | |||| |||||||| |||||||| |
Sbjct 853 TTCCTTGGAGGAATTGA--A-GGGGTTAG-CCCTGGAAGTGTAATAATCCTAACATCCAG 908
Query 276 AGATAAACAAGTTCTTCATCAGTGTCAGGTTGA-TA-GTATTTACG-AGATACCG-GCTT 331
|||||||||||||||||||||||| ||||| || | ||| || || || | ||| | |
Sbjct 909 AGATAAACAAGTTCTTCATCAGTGCCAGGTCGAGGATGTA-TT-CGAAG-TTCCGAG-TC 964
Query 332 TAAAC-AGGAAGGAGGCTCAACGGTTATTCACACGGTTTGCGTTTTCAGAAA-AAGAACC 389
| ||| ||||| || ||| |||||||||| | ||| ||| || || ||| ||| ||
Sbjct 965 TGAACGAGGAA-GAAGCTGTACGGTTATTCGCCCGGACCGCG-TTCCATAAAGAAGGGCC 1022
Query 390 AAGTGATAG-T-AA-TCGTGTAGAAGTGTCAAAGAAGGTCG-TTGAGTATGCTAATGGGA 445
||||||| | | || | || || || ||||||||||| | | || |||||| ||| |
Sbjct 1023 AAGTGAT-GCTAAATTAATG--GACGTATCAAAGAAGGTTGCTAGA-TATGCTGGTGGAA 1078
Query 446 ATCCTTTA-GCTCTCTGTC-TCTATGGCAGAGAGCTGG-G--GAAGAAGAAACCGGAAGA 500
|||| | | ||||| || | ||||||| |||||||||| | ||| ||||| ||||||||
Sbjct 1079 ATCC-TAAGGCTCTATG-CTTCTATGGGAGAGAGCTGGAGAAGAAAAAGAAGCCGGAAGA 1136
Query 501 AATGGTGGCCGAATTCGAGATGATTAAGCAATGTCCTCCACAGGAGATTA-TGCA-TGTG 558
||||| || || || |||| ||| | ||||||||| || || || | || | || | |
Sbjct 1137 AATGGAGGAGGAGTTTGAGAAGATGAGGCAATGTCCCCCCCAAGA-AATACT-CAGTTTA 1194
Query 559 TTCAAG-AGCAGTTATGATGTGCTCAGTGA-AGATGAGAGGAGCATATTCTTAGACATTG 616
||| || ||||| ||||||| || | || | ||||||| || |||||||| |||||||
Sbjct 1195 TTC-AGAAGCAGCTATGATGCACTTAACGACA-ATGAGAGAAGTATATTCTTGGACATTG 1252
Query 617 CTTGTTTCTTTAACGGTGAAAACC-T-CGATTATGTCATTCGTATACTTGAAGGGTGTGG 674
| ||||||||||| |||| |||| | || |||| || || |||||||||||||||||
Sbjct 1253 CGTGTTTCTTTAATGGTG--AACCGTGTGACGATGTAATGCGAATACTTGAAGGGTGTGG 1310
Query 675 TTTCTTCCCACACGTTGGTATTGAACATCTCG-TAGAACGGTCTTTATTGATGATATCGA 733
||||| ||||||||||| ||||| | ||| | | || |||||| || ||| ||| || |
Sbjct 1311 GTTCTTTCCACACGTTGGGATTGACCGTCTTGCT-GAGCGGTCTCTACTGACGATCTCAA 1369
Query 734 A-GAACAACAA-AGTTGAGATGCAA-TTTTTGATTCAGGATGTTGCTCG-GAATATCGTC 789
| ||| || || ||| ||||||||| |||| ||||| |||| ||| || |||| || ||
Sbjct 1370 AGGAA-AA-AAGAGTGGAGATGCAAGGTTTT-ATTCAAGATGCTGCCCGTGAAT-TCATC 1425
Query 790 AATGAAGaaaaaaaTCAAATCGCAAGGCATCGCAGATTGTGGGAGCCTTCAAGCATTAAA 849
|| || | | ||| |||| ||||||| ||||| || ||||| || | |
Sbjct 1426 AA-CCAG------A-C--TTCG--AGGCGTCGCAGACACTGGGAACCATCAAGAATCAGA 1473
Query 850 TCATTTCTA-AAAGAAAATAAACCTAAGGGCACTGAAGTTATTGAAGGAATTTTTCTAGA 908
| ||| ||| ||| | ||||| ||||||| | ||||||||||||||| |||||||| ||
Sbjct 1474 TTATTACTAGAAA-ATGATAAATCTAAGGGGAATGAAGTTATTGAAGGGATTTTTCTTGA 1532
Query 909 CACAACAAACTTAACCGTTGATGTTAATCCTAAGGCCTTTGAGAATATGTATAATCTTAG 968
||||||||| |||||| ||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1533 CACAACAAAATTAACCTTTGATGTTAATCCTATGGCGTTTGAGAATATGTATAATCTTAG 1592
Query 969 ACTGTTGAAGATCTACAGTTCAAACTCTGAAAGTGCTCAAGAA-TTCCATCTTCCCAAGA 1027
||||||||||||||| ||| || |||| |||| |||||||||| ||| |||| | |||
Sbjct 1593 ACTGTTGAAGATCTATAGTACACACTCCGAAACTGCTCAAGAACTTCG-TCTTACTAAG- 1650
Query 1028 GA-CTCCGCTCTTTGCCTTATGAGCTCAGGCTACTTCACTGGGAAAAGTATCCGTTGCGA 1086
|| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
Sbjct 1651 GAACTTCGCTCTTTGCCTTATGAGCTCAGGCTACTCCACTGGGAGAAGTATCCGTTGCAA 1710
Query 1087 TCGTTGCCTGAAGACTTTGATC-CTAGACACCTTGTTGAACTCAATATGCCTTATAGTCA 1145
||||||||| |||| ||||| | || | ||||||||||||||||||||||||||||||||
Sbjct 1711 TCGTTGCCTCAAGATTTTGA-CACTCGGCACCTTGTTGAACTCAATATGCCTTATAGTCA 1769
Query 1146 GCTTCAGAA-TCTCTGGGAAGGAACCAAGAGTCTGGTGAAGTTGAAGATAATAAATCTTA 1204
|||||| || |||||| | ||||| ||||| || | || || ||||| ||||||||||
Sbjct 1770 GCTTCA-AAGTCTCTGTGTTGGAACTAAGAGCCTAGCCAAATTAAAGATGATAAATCTTA 1828
Query 1205 GCCATTCTCAGAAACTAGTTGAAGTTGATGTACTTATGAAAGCTTGTAGTATTGAGCAAA 1264
|||| |||||||||||| |||||||||| | ||| |||||| |||| | ||||| |||
Sbjct 1829 GCCACTCTCAGAAACTACTTGAAGTTGACGAACTCGCGAAAGCGTGTAATCTTGAGAAAA 1888
Query 1265 TAGATCTTCAAGGTTGTACAAGCTTGGAGAGCATCCCACACATTGATCAGCTAAAGAATC 1324
|||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct 1889 TAGATCTTCAAGGTTGTACAAGCTTGAAGAGCATCCCACACACGGATCGGCTAAAGAATC 1948
Query 1325 TTCAACTTCTAAATCTTTCTGGTTGCACGAG-ACTCAAACGTAAAGAGATTCTAGAGGAA 1383
||||| |||| ||||| |||||||||||||| | ||||||||| ||| | || || ||
Sbjct 1949 TTCAATTTCTGAATCTATCTGGTTGCACGAGTA-TCAAACGTACGGAGGCTATAAAG-AA 2006
Query 1384 -ATAAAAAGACTTGA-TCCAGAAGGCGGCTTAAGAGAAACAAAATTTGAATCAATGGTGT 1441
|||||| || | || || ||||||| ||||||||||||| | |||||||||||||||||
Sbjct 2007 GATAAAAGGAAT-GAATCAAGAAGGCTGCTTAAGAGAAACTACATTTGAATCAATGGTGT 2065
Query 1442 TC 1443
||
Sbjct 2066 TC 2067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5