BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887748
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29010.1 | Symbols: | pseudogene, receptor protein kinase, ... 584 5e-166
AT3G46330.1 | Symbols: MEE39 | Leucine-rich repeat protein kina... 178 1e-43
> AT2G29010.1 | Symbols: | pseudogene, receptor protein kinase,
contains a protein kinase domain (PS50011); contains a S-locus
glycoprotein family domain (PF00954); contains LRR Leucine
Rich Repeat domains; blastp match of 42% identity and 3.1e-185
P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated
receptor-like protein kinase {Phaseolus
vulgaris} | chr2:12465764-12469464 FORWARD LENGTH=3701
Length=3701
Score = 584 bits (316), Expect = 5e-166
Identities = 361/383 (94%), Gaps = 1/383 (0%)
Strand=Plus/Plus
Query 1 CTACCACAAGAACTAATCTCAAAGGCAATCACTAACAAAAATGTGACTGAGAAGTTATCT 60
|||||||||||| | |||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 821 CTACCACAAGAAGT-ATCTCAAAGGCAATCATTAACGAAAACGTGACTGAGAAGTTATCT 879
Query 61 TTCGACTGGTATGTCGATAACCGCGAAGATCAAGCTCTCATCTACCTACATTTTGCTGAG 120
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct 880 TTCGACTGGTATGTCGATAACCGCGAGGATCAAGCTCTCATATACCTTCATTTCGCTGAG 939
Query 121 ATTCAAACACTTAAAGGCAATGACACAAGAGAGTTTGACATTATATGGAAAGGAAACGAT 180
|||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 940 ATTCAATCACTTAAAGGCAATGACACAAGAGAGTTCGACATTATATGGAAAGGGAACGAT 999
Query 181 GGAAACATTACCATTTCAGCTTATCGCCCTTCGAAGTTTCAGCTAGAGACTTTATACAAC 240
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1000 GGAAACATTACCATTTCAGCTTATCGCCCTTCGAAGTTACAGCTAGAGACTCTATACAAC 1059
Query 241 ACATCGCCTATGAAATGTAAGTTTATGCAATGTACAGTGGAGCTGGTTATGACTAAGAGC 300
||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||
Sbjct 1060 ACATCGCCTATGAAATGTAGGTTTATGCAATGTACAGTGGAACTTGTTATGACTAAGAGC 1119
Query 301 TCAACGCTCCCACCAATGATCAATGCTATGGAAGCTTACCAGATTATTGAGTTCCCGGAT 360
||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| | |||
Sbjct 1120 TCAACTCTCCCACCAATGATCAATGCTATGGAAGCTTACCAAATTATAGAGTTCTCAGAT 1179
Query 361 GCAGAAACTAATCCAGAGGATGG 383
|||||||||||||||||||||||
Sbjct 1180 GCAGAAACTAATCCAGAGGATGG 1202
Score = 339 bits (183), Expect = 5e-92
Identities = 209/222 (94%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 663 AGTTGCTACACGCGAGTTACCAAGAAAGTCATCTATCTTTGCCAAAAATAAAAAGTTCAC 722
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 2254 AGTTGCTACACGGGAGTTACCAAGAAAGTCATCAATCTTTGCCAAAAAGAAAAAGTTCAC 2313
Query 723 TTATTTGGAAGTCGTTGAGCTAACGGATAACTTCAAAAGAGTTCTTGGAGAAGGAGGATT 782
||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||||||| ||
Sbjct 2314 TTATTCGGAAGTCGTTGAGCTTACGAATAACTTCAGAAGAGTTCTTGGAGAAGGAGGCTT 2373
Query 783 TGGAGTTGTCTACCACGGTTCTTTGAGTGATACCGAACCAGTAGCGGTTAAAGTTCTTTC 842
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2374 CGGAGTTGTCTACCATGGTTCTTTGAGTGATACCGAACAAGTAGCGGTTAAAGTTCTTTC 2433
Query 843 CGAGTCATCAGTTCAAGGCTATAAAGAATTTAAGGCAGAGGT 884
||||||||| |||||||||||||| |||||||||||||||||
Sbjct 2434 CGAGTCATCCGTTCAAGGCTATAAGGAATTTAAGGCAGAGGT 2475
Score = 231 bits (125), Expect = 8e-60
Identities = 143/152 (94%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 513 TGTTCAAGGAAACCCAAATCTATGTCTCTCTGACTCATGCAAGAACAAGAAAGTCCTAGT 572
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1997 TGTTCAAGGAAACCCAAATCTATGTCTCTCTGGCTCATGCAAGAACACGAAAGTCCTAGT 2056
Query 573 GCCGGTTTTTGCATCCCTTGCTTCAATGGCGGCTCTTATCGCCTTGTTGGGTCTCATTTT 632
|||||||||||| || ||||||||| |||||||||||||||| ||||||| |||||||||
Sbjct 2057 GCCGGTTTTTGCGTCTCTTGCTTCATTGGCGGCTCTTATCGCTTTGTTGGCTCTCATTTT 2116
Query 633 TGTTTTGAGAAAGAAAAAGCCCTTATCAAAAG 664
||||||||||| |||||||||| |||||||||
Sbjct 2117 TGTTTTGAGAAGGAAAAAGCCCGTATCAAAAG 2148
Score = 200 bits (108), Expect = 2e-50
Identities = 123/130 (95%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 881 AGGTGGAGCTTCTAT-TAAGAGTTCATCACATAAACTTGGTAAGCCTTGTTGGTTACTGT 939
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2556 AGGTGGAGCTTCT-TCTAAGAGTTCATCACATAAACTTGGTAAGCCTTGTTGGTTACTGT 2614
Query 940 GATGAAGGAGGTCATTTGGCACTCATCTATGAGTACATGGCTAATGGAGACCTTAAACAA 999
||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 2615 GATGAAGGAGGCCATTTAGCACTTATATATGAGTACATGGCTAATGGAGACCTTAAACAA 2674
Query 1000 CATTTATCAG 1009
||| ||||||
Sbjct 2675 CATCTATCAG 2684
Score = 122 bits (66), Expect = 5e-27
Identities = 74/78 (95%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 435 AAACTTAGGTTGGAATAGCTTAACCGGTCCGATTCCTCTAGCCCTTCGCAATAGAGAAAA 494
|||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||
Sbjct 1847 AAACTTAGGTTGGAATAGCTTAACCGGTCCAATTCCTCGAGCCCTTCACAATAGAGAAAA 1906
Query 495 GAAAGGACTAAAATTGGT 512
|||||| |||||||||||
Sbjct 1907 GAAAGGGCTAAAATTGGT 1924
Score = 97.1 bits (52), Expect = 3e-19
Identities = 61/65 (94%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 1008 AGAATGC-TCTGGACCTACTTTGAAATGGGCTAGTAGACTAAAAATTGCTATTGAGGCGG 1066
||||| | |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 2786 AGAAT-CTTCTGGACCTACTTTGAAATGGGCTAGTAGACTCAAAATTGCTATCGAGGCGG 2844
Query 1067 CACAA 1071
|||||
Sbjct 2845 CACAA 2849
> AT3G46330.1 | Symbols: MEE39 | Leucine-rich repeat protein kinase
family protein | chr3:17020747-17025011 REVERSE LENGTH=2904
Length=2904
Score = 178 bits (96), Expect = 1e-43
Identities = 242/312 (78%), Gaps = 12/312 (4%)
Strand=Plus/Plus
Query 704 CCAAAAATAAAAAGTTCACTTATTTGGAAGTCGTTGAGCTAACGGATAACTT-CAAAAGA 762
||||||| |||| ||| ||||||| ||||| | || | || | ||||| | |||||
Sbjct 1779 CCAAAAAGAAAAGGTTTACTTATTCAGAAGTTATGGAAATGACTAAGAACTTGC-AAAGA 1837
Query 763 GTTCTTGGAGAAGGAGGATTTGGAGTTGTCTACCACGGTTCTTTGAGT-GATACCGAACC 821
|||||| ||||| || ||||| ||||| || || || | | | | | | | || |
Sbjct 1838 CCTCTTGGGGAAGGGGGGTTTGGTGTTGTTTATCATGGCGATCTAAATGGCT-CAGAGCA 1896
Query 822 AGTAGCGGTTAAAGTTCTTTCCGAGTCATCAGTTCAAGGCTATAAAGAATTTAAGGCAGA 881
|||||| || ||| | || ||| | |||||| ||||||||||||||||||||||||||
Sbjct 1897 AGTAGCTGTCAAACTACTATCCCAAACATCAGCACAAGGCTATAAAGAATTTAAGGCAGA 1956
Query 882 GGTGGAGCTTCTA-TTAAGAGTTCATCACATAAACTTGGT-AAGCCTTGTTGGTTACTGT 939
||| || ||||| ||| | ||||| |||||||| ||||| || ||||||||| || |||
Sbjct 1957 GGTTGAACTTCTTCTTAGG-GTTCACCACATAAATTTGGTCAA-CCTTGTTGGATATTGT 2014
Query 940 GATGAAGGAGGTCA-TTTGGCACTCATCTATGAGTACATGGCTAATGGAGACCTTAAA-C 997
|||||| || ||| |||| | ||||||||||| |||||| ||||||||||| ||| | |
Sbjct 2015 GATGAACAAGATCACTTTG-CTCTCATCTATGAATACATGTCTAATGGAGAC-TTACATC 2072
Query 998 AACATTTATCAG 1009
||||||||||||
Sbjct 2073 AACATTTATCAG 2084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5