BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg887748 Length=1071 Score E Sequences producing significant alignments: (Bits) Value AT2G29010.1 | Symbols: | pseudogene, receptor protein kinase, ... 584 5e-166 AT3G46330.1 | Symbols: MEE39 | Leucine-rich repeat protein kina... 178 1e-43 > AT2G29010.1 | Symbols: | pseudogene, receptor protein kinase, contains a protein kinase domain (PS50011); contains a S-locus glycoprotein family domain (PF00954); contains LRR Leucine Rich Repeat domains; blastp match of 42% identity and 3.1e-185 P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated receptor-like protein kinase {Phaseolus vulgaris} | chr2:12465764-12469464 FORWARD LENGTH=3701 Length=3701 Score = 584 bits (316), Expect = 5e-166 Identities = 361/383 (94%), Gaps = 1/383 (0%) Strand=Plus/Plus Query 1 CTACCACAAGAACTAATCTCAAAGGCAATCACTAACAAAAATGTGACTGAGAAGTTATCT 60 |||||||||||| | |||||||||||||||| |||| |||| |||||||||||||||||| Sbjct 821 CTACCACAAGAAGT-ATCTCAAAGGCAATCATTAACGAAAACGTGACTGAGAAGTTATCT 879 Query 61 TTCGACTGGTATGTCGATAACCGCGAAGATCAAGCTCTCATCTACCTACATTTTGCTGAG 120 |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||| Sbjct 880 TTCGACTGGTATGTCGATAACCGCGAGGATCAAGCTCTCATATACCTTCATTTCGCTGAG 939 Query 121 ATTCAAACACTTAAAGGCAATGACACAAGAGAGTTTGACATTATATGGAAAGGAAACGAT 180 |||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 940 ATTCAATCACTTAAAGGCAATGACACAAGAGAGTTCGACATTATATGGAAAGGGAACGAT 999 Query 181 GGAAACATTACCATTTCAGCTTATCGCCCTTCGAAGTTTCAGCTAGAGACTTTATACAAC 240 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 1000 GGAAACATTACCATTTCAGCTTATCGCCCTTCGAAGTTACAGCTAGAGACTCTATACAAC 1059 Query 241 ACATCGCCTATGAAATGTAAGTTTATGCAATGTACAGTGGAGCTGGTTATGACTAAGAGC 300 ||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||| Sbjct 1060 ACATCGCCTATGAAATGTAGGTTTATGCAATGTACAGTGGAACTTGTTATGACTAAGAGC 1119 Query 301 TCAACGCTCCCACCAATGATCAATGCTATGGAAGCTTACCAGATTATTGAGTTCCCGGAT 360 ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| | ||| Sbjct 1120 TCAACTCTCCCACCAATGATCAATGCTATGGAAGCTTACCAAATTATAGAGTTCTCAGAT 1179 Query 361 GCAGAAACTAATCCAGAGGATGG 383 ||||||||||||||||||||||| Sbjct 1180 GCAGAAACTAATCCAGAGGATGG 1202 Score = 339 bits (183), Expect = 5e-92 Identities = 209/222 (94%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 663 AGTTGCTACACGCGAGTTACCAAGAAAGTCATCTATCTTTGCCAAAAATAAAAAGTTCAC 722 |||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 2254 AGTTGCTACACGGGAGTTACCAAGAAAGTCATCAATCTTTGCCAAAAAGAAAAAGTTCAC 2313 Query 723 TTATTTGGAAGTCGTTGAGCTAACGGATAACTTCAAAAGAGTTCTTGGAGAAGGAGGATT 782 ||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||||||| || Sbjct 2314 TTATTCGGAAGTCGTTGAGCTTACGAATAACTTCAGAAGAGTTCTTGGAGAAGGAGGCTT 2373 Query 783 TGGAGTTGTCTACCACGGTTCTTTGAGTGATACCGAACCAGTAGCGGTTAAAGTTCTTTC 842 |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2374 CGGAGTTGTCTACCATGGTTCTTTGAGTGATACCGAACAAGTAGCGGTTAAAGTTCTTTC 2433 Query 843 CGAGTCATCAGTTCAAGGCTATAAAGAATTTAAGGCAGAGGT 884 ||||||||| |||||||||||||| ||||||||||||||||| Sbjct 2434 CGAGTCATCCGTTCAAGGCTATAAGGAATTTAAGGCAGAGGT 2475 Score = 231 bits (125), Expect = 8e-60 Identities = 143/152 (94%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 513 TGTTCAAGGAAACCCAAATCTATGTCTCTCTGACTCATGCAAGAACAAGAAAGTCCTAGT 572 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 1997 TGTTCAAGGAAACCCAAATCTATGTCTCTCTGGCTCATGCAAGAACACGAAAGTCCTAGT 2056 Query 573 GCCGGTTTTTGCATCCCTTGCTTCAATGGCGGCTCTTATCGCCTTGTTGGGTCTCATTTT 632 |||||||||||| || ||||||||| |||||||||||||||| ||||||| ||||||||| Sbjct 2057 GCCGGTTTTTGCGTCTCTTGCTTCATTGGCGGCTCTTATCGCTTTGTTGGCTCTCATTTT 2116 Query 633 TGTTTTGAGAAAGAAAAAGCCCTTATCAAAAG 664 ||||||||||| |||||||||| ||||||||| Sbjct 2117 TGTTTTGAGAAGGAAAAAGCCCGTATCAAAAG 2148 Score = 200 bits (108), Expect = 2e-50 Identities = 123/130 (95%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 881 AGGTGGAGCTTCTAT-TAAGAGTTCATCACATAAACTTGGTAAGCCTTGTTGGTTACTGT 939 ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2556 AGGTGGAGCTTCT-TCTAAGAGTTCATCACATAAACTTGGTAAGCCTTGTTGGTTACTGT 2614 Query 940 GATGAAGGAGGTCATTTGGCACTCATCTATGAGTACATGGCTAATGGAGACCTTAAACAA 999 ||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||| Sbjct 2615 GATGAAGGAGGCCATTTAGCACTTATATATGAGTACATGGCTAATGGAGACCTTAAACAA 2674 Query 1000 CATTTATCAG 1009 ||| |||||| Sbjct 2675 CATCTATCAG 2684 Score = 122 bits (66), Expect = 5e-27 Identities = 74/78 (95%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 435 AAACTTAGGTTGGAATAGCTTAACCGGTCCGATTCCTCTAGCCCTTCGCAATAGAGAAAA 494 |||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| Sbjct 1847 AAACTTAGGTTGGAATAGCTTAACCGGTCCAATTCCTCGAGCCCTTCACAATAGAGAAAA 1906 Query 495 GAAAGGACTAAAATTGGT 512 |||||| ||||||||||| Sbjct 1907 GAAAGGGCTAAAATTGGT 1924 Score = 97.1 bits (52), Expect = 3e-19 Identities = 61/65 (94%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 1008 AGAATGC-TCTGGACCTACTTTGAAATGGGCTAGTAGACTAAAAATTGCTATTGAGGCGG 1066 ||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 2786 AGAAT-CTTCTGGACCTACTTTGAAATGGGCTAGTAGACTCAAAATTGCTATCGAGGCGG 2844 Query 1067 CACAA 1071 ||||| Sbjct 2845 CACAA 2849 > AT3G46330.1 | Symbols: MEE39 | Leucine-rich repeat protein kinase family protein | chr3:17020747-17025011 REVERSE LENGTH=2904 Length=2904 Score = 178 bits (96), Expect = 1e-43 Identities = 242/312 (78%), Gaps = 12/312 (4%) Strand=Plus/Plus Query 704 CCAAAAATAAAAAGTTCACTTATTTGGAAGTCGTTGAGCTAACGGATAACTT-CAAAAGA 762 ||||||| |||| ||| ||||||| ||||| | || | || | ||||| | ||||| Sbjct 1779 CCAAAAAGAAAAGGTTTACTTATTCAGAAGTTATGGAAATGACTAAGAACTTGC-AAAGA 1837 Query 763 GTTCTTGGAGAAGGAGGATTTGGAGTTGTCTACCACGGTTCTTTGAGT-GATACCGAACC 821 |||||| ||||| || ||||| ||||| || || || | | | | | | | || | Sbjct 1838 CCTCTTGGGGAAGGGGGGTTTGGTGTTGTTTATCATGGCGATCTAAATGGCT-CAGAGCA 1896 Query 822 AGTAGCGGTTAAAGTTCTTTCCGAGTCATCAGTTCAAGGCTATAAAGAATTTAAGGCAGA 881 |||||| || ||| | || ||| | |||||| |||||||||||||||||||||||||| Sbjct 1897 AGTAGCTGTCAAACTACTATCCCAAACATCAGCACAAGGCTATAAAGAATTTAAGGCAGA 1956 Query 882 GGTGGAGCTTCTA-TTAAGAGTTCATCACATAAACTTGGT-AAGCCTTGTTGGTTACTGT 939 ||| || ||||| ||| | ||||| |||||||| ||||| || ||||||||| || ||| Sbjct 1957 GGTTGAACTTCTTCTTAGG-GTTCACCACATAAATTTGGTCAA-CCTTGTTGGATATTGT 2014 Query 940 GATGAAGGAGGTCA-TTTGGCACTCATCTATGAGTACATGGCTAATGGAGACCTTAAA-C 997 |||||| || ||| |||| | ||||||||||| |||||| ||||||||||| ||| | | Sbjct 2015 GATGAACAAGATCACTTTG-CTCTCATCTATGAATACATGTCTAATGGAGAC-TTACATC 2072 Query 998 AACATTTATCAG 1009 |||||||||||| Sbjct 2073 AACATTTATCAG 2084 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52459569525 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5