BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887754
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45880.1 | Symbols: BMY4, BAM7 | beta-amylase 7 | chr2:18878... 869 0.0
> AT2G45880.1 | Symbols: BMY4, BAM7 | beta-amylase 7 | chr2:18878518-18882578
REVERSE LENGTH=2855
Length=2855
Score = 869 bits (470), Expect = 0.0
Identities = 520/544 (96%), Gaps = 4/544 (1%)
Strand=Plus/Plus
Query 283 GCTGATATTAACGATGTTATCGCGGCTTTGGCAAGGGAAGCTGGATGGGTTGTTCTTCCT 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GCTGATATTAACGATGTTATCGCGGCTTTGGCAAGGGAAGCTGGATGGGTTGTTCTTCCT 1007
Query 343 GATGGAACTACTTTTCCAGCCAAATCTCAGGGGACAAAGCCTACTGGTGGTTCTTCTGCG 402
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GATGGAACTACTTTTCCATCCAAATCTCAGGGGACAAAGCCTACTGGTGGTTCTTCTGCG 1067
Query 403 GTTGCTGCAGGTTCATCAGCTTCTCACATTGCGTCACAGCAAACCTCTA-CTCCTGCTCT 461
||||| |||||||||||||||||||||||||| |||||||||||||| | ||||||||||
Sbjct 1068 GTTGCGGCAGGTTCATCAGCTTCTCACATTGCATCACAGCAAACCTC-ACCTCCTGCTCT 1126
Query 462 TAGAGTGGTATCATCTGGGCGTAGAAGCCCAGTGGAACTCAGCGCTTGCCGTATGAAAGG 521
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1127 TAGAGTGGTATCATCTGGGCTTAGAAGCCCAGTGGAACTCAGCTCTTGCCGTATGAAAGG 1186
Query 522 TGTTTTCACACCCGCTTCATCGCCATACGATATATTCCCAACT-CAATCTCCAGAACTGG 580
|||||||||||||||| |||| || || ||||| |||||| | ||||||||||||||||
Sbjct 1187 TGTTTTCACACCCGCTCCATCACCGTATGATATGCTCCCAA-TCCAATCTCCAGAACTGG 1245
Query 581 TTGGTAGTGTCAATAAGGCTGAGGGGCTTGTTGGTTGTTCAGTTGATGTTATCAACTCTA 640
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1246 TTGGCAGTGTAAATAAGGCTGAGGGGCTTGTTGGTTGTTCAGTCGATGTTATCAACTCTA 1305
Query 641 AACAGATTCTCGATATTCCTCCAAATCTGACAGAGCAAGATTTCTCTGGCACTCCTTATG 700
|||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1306 AACAAATTCTCGAGATTCCTCCAAATCTGACGGAGCAAGATTTCTCTGGCACTCCTTATG 1365
Query 701 TTCCGGTTTATGTGATGTTACCACTTGGGGTTATCAATATGAAGTGTGAATTGGCTGATC 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 TTCCGGTTTATGTGATGTTACCACTTGGGGTTATCAATATGAAGTGTGAATTGGCTGATC 1425
Query 761 GAGATGGACTGGTAAAGCACTTAAGAATATTGAAATCAATCCATGTCGATGGGGTTAAAG 820
||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1426 GAGATGGACTGCTAAAGCACTTACGAATATTGAAATCAATCCATGTTGATGGGGTTAAAG 1485
Query 821 TGGA 824
||||
Sbjct 1486 TGGA 1489
Score = 453 bits (245), Expect = 1e-126
Identities = 273/286 (95%), Gaps = 3/286 (1%)
Strand=Plus/Plus
Query 1 ATGGCAACGGATATGCAGAAACTGCTTGGAACTAGtgaagaggatgatgatgaagaaatg 60
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 624 ATGGCGACGGATATGCATAAACTGCTTGGAACTAGTGAAGAGGATGATGACGAAGAAATG 683
Query 61 gatatggatgtgaaggaagaagatgatggagaCCGACGAAATAGAGACACACGCGCTGCT 120
|| |||||||||||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct 684 GACATGGATGTGAAGGAAGAAGATGATGGAGACCGACGAAATAGAGACAAACACGCAGCT 743
Query 121 TCAGGC---AGTAGTAATGATGAGTTTATGTTTCAGCAGTCAATGCAAGATCAAGTGGGC 177
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 744 TCAGGCAGTAGTAGTAATGACGAGTTTATGTTTCAGCAGTCAATGCAAGATCAAGTGGGC 803
Query 178 ACTCCTGGGGGAGGAGGAAGTCGCAGAAGTAGACCGCTTGAAGAGAAGGAGCGAACTAAG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 ACTCCTGGGGGAGGAGGAAGTCGCAGAAGTAGACCGCTTGAAGAGAAGGAGCGAACTAAG 863
Query 238 TTAAGAGAGCGCCATCGAAGGGCTATTACTGCAAGGATACTAGGCG 283
|| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 864 TTGAGAGAGCGCCATCGAAGGGCTATAACTGCAAGGATACTAGGCG 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5