BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887756

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35250.1 | Symbols:  | Protein of Unknown Function (DUF239) ...   579    1e-164


> AT2G35250.1 | Symbols:  | Protein of Unknown Function (DUF239) 
| chr2:14846662-14848662 REVERSE LENGTH=1029
Length=1029

 Score =  579 bits (313),  Expect = 1e-164
 Identities = 350/368 (95%), Gaps = 2/368 (1%)
 Strand=Plus/Plus

Query  1    GAAACATTCAGCCTGGATGGAATTATTGAAAGAAGCAACAAATATAATACAAAAGAGCAT  60
            |||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||
Sbjct  145  GAAACATTCAGCCTAGATGGAAAAATTGAAAGAAGCAACAAATATAATACAAAAGAGCAT  204

Query  61   TGTCCAAAAGGAACCGTTGCAATTTTAAGACAAAGAAATGAATCCAAGAGCGTTCATTTG  120
            |||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||
Sbjct  205  TGTCCAAAAGGAACCGTTGCAATTTTGAGACAAAGAAATGTATCCAAGGGCGTTCATTTG  264

Query  121  AATACAGCCGAATATTCTGGTCAACATTTCGCAACAATTGAGACCATGTTAGATGGAAGT  180
            ||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  265  AATACCGCCGAGTATTCTGGTCAACATTTTGCAACAATTGAGACCATTTTAGATGGAAGT  324

Query  181  ATATATCGGGGAGCAGAAGCTGATATAAGTATTCATGATTTAAAATTGCAAAATAATCAA  240
            ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||
Sbjct  325  ATATATCGGGGAGCAGAAGCTGATATAAGTATTCATGATTTGAAACTGCAAAATAACCAA  384

Query  241  TACAGTAAATGTCAAATATGGTTAGAGAATGGACCTCCAGATCAACTCAATAGTATACAA  300
            ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  385  TACAGTAAAAGTCAAATATGGTTAGAGAATGGACCTCCAGGTCAACTCAATAGTATACAA  444

Query  301  GCTGGTT-GGACAGTCCATCCAAGATTGTACGGTGATAGTGTCACACGATTTACAATATA  359
            ||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GCTGGTTTGG-CAGTACATCCAAGATTGTACGGTGATAGTGTCACACGATTTACAATATA  503

Query  360  TTGGACTG  367
            ||||||||
Sbjct  504  TTGGACTG  511



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27226907674


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5