BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887758

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G15000.1 | Symbols:  | cobalt ion binding | chr3:5050257-505...   601    2e-171


> AT3G15000.1 | Symbols:  | cobalt ion binding | chr3:5050257-5052432 
FORWARD LENGTH=1563
Length=1563

 Score =  601 bits (325),  Expect = 2e-171
 Identities = 405/441 (92%), Gaps = 15/441 (3%)
 Strand=Plus/Plus

Query  1    ATGGCGACGCATACCATTTCTCGCTCCATTCTTTGCCGACCGGCGAAATCTCTTTCCCTT  60
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||
Sbjct  65   ATGGCGACGCATACCATTTCTCGATCCATTCTTTGCCGACCGGCGAAATCTCTTTCGTTT  124

Query  61   CTGTTCACGCGATCTTTTGCTTCATCTGCTCCTCTCGCCAAAACTCCGGCGTCTTCTCTT  120
            |||||||||||||| ||||||||||||||||||||||||||| ||||||||         
Sbjct  125  CTGTTCACGCGATCCTTTGCTTCATCTGCTCCTCTCGCCAAATCTCCGGCG---------  175

Query  121  TACACGTCGTCTCTGCTCAGCCGTTCCCGTCCTCTCGTCGCCGCTTTTTCCTCCGTTTTC  180
            |   | |  |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct  176  T---C-T--TCTCTGCTCAGCCGGTCCCGTCCTCTGGTCGCCGCTTTTTCCTCCGTTTTC  229

Query  181  CGTGGCGGCCTTGTGTCTGTTAAAGGTCTCTCAACGCAGGCTACGTCGTCTTCTCTGAAC  240
            |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct  230  CGTGGCGGCCTTGTGTCTGTCAAAGGTCTCTCGACGCAGGCTACATCGTCTTCTCTGAAC  289

Query  241  GATCCGAACCCCAACTGGTCGAACAGGCCACCTAAGGAGACGATCCTGCTCGATGGATGC  300
            || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  290  GACCCGAATCCCAACTGGTCGAACAGGCCACCTAAGGAGACGATCCTGCTCGATGGTTGC  349

Query  301  GATTTCGAGCACTGGCTTGTCGTCGTGAATCCACCGGAGGGTGATCCTACTAGAGACGAT  360
            ||||||||||||||||||||||||||| | |||||  ||||||| ||||||||||| || 
Sbjct  350  GATTTCGAGCACTGGCTTGTCGTCGTGGAGCCACCTCAGGGTGAGCCTACTAGAGATGAA  409

Query  361  ATCATTGATAGTTACATCAAAACCCTAGCTCAGATTGTTGGCAGTGAAGACGAAGCTAGG  420
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  410  ATCATTGATAGCTACATCAAAACCCTAGCTCAGATTGTTGGCAGTGAAGACGAAGCTAGG  469

Query  421  ATGAAGATCTACTCGGTTTCA  441
            |||||||||||||||||||||
Sbjct  470  ATGAAGATCTACTCGGTTTCA  490



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20961651333


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5