BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887761
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39260.1 | Symbols: | binding;RNA binding | chr2:16392047-1... 361 2e-99
> AT2G39260.1 | Symbols: | binding;RNA binding | chr2:16392047-16399680
REVERSE LENGTH=3879
Length=3879
Score = 361 bits (195), Expect = 2e-99
Identities = 213/222 (96%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 1 ATGGATCATCCAGAAGATGAAACCCACAGCGAGAAACAAGACGACGAGGAAGCTCTTGCT 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 93 ATGGATCATCCAGAAGATGAATCCCACAGCGAGAAACAAGACGACGAGGAAGCTCTTGCT 152
Query 61 CGTCTTGAAGAGATTAAGAAGTCAGTGGAAGCTAAAATGACTCTTCGTCAAAATAATCTC 120
|||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||||||
Sbjct 153 CGTCTTGAAGAGATTAAGAAGTCAATTGAAGCTAAACTGACTCTTCGTCAAAACAATCTC 212
Query 121 AATCCTGAACGACCTGATTCAACATATCTTAGGACTCTGGATTCTAGTATCAAGCGGAAT 180
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 213 AATCCTGAACGACCTGATTCAGCATATCTTAGGACTCTAGATTCTAGTATCAAGCGGAAT 272
Query 181 ACAGCAGTTATCAAGAAGTTAAAGCAGATCAATGAGGAGCAG 222
||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 273 ACAGCAGTTATTAAGAAGTTAAAGCAGATCAATGAAGAGCAG 314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10556227290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5