BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887761

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G39260.1 | Symbols:  | binding;RNA binding | chr2:16392047-1...   361    2e-99


> AT2G39260.1 | Symbols:  | binding;RNA binding | chr2:16392047-16399680 
REVERSE LENGTH=3879
Length=3879

 Score =  361 bits (195),  Expect = 2e-99
 Identities = 213/222 (96%), Gaps = 0/222 (0%)
 Strand=Plus/Plus

Query  1    ATGGATCATCCAGAAGATGAAACCCACAGCGAGAAACAAGACGACGAGGAAGCTCTTGCT  60
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  93   ATGGATCATCCAGAAGATGAATCCCACAGCGAGAAACAAGACGACGAGGAAGCTCTTGCT  152

Query  61   CGTCTTGAAGAGATTAAGAAGTCAGTGGAAGCTAAAATGACTCTTCGTCAAAATAATCTC  120
            |||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||||||
Sbjct  153  CGTCTTGAAGAGATTAAGAAGTCAATTGAAGCTAAACTGACTCTTCGTCAAAACAATCTC  212

Query  121  AATCCTGAACGACCTGATTCAACATATCTTAGGACTCTGGATTCTAGTATCAAGCGGAAT  180
            ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct  213  AATCCTGAACGACCTGATTCAGCATATCTTAGGACTCTAGATTCTAGTATCAAGCGGAAT  272

Query  181  ACAGCAGTTATCAAGAAGTTAAAGCAGATCAATGAGGAGCAG  222
            ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct  273  ACAGCAGTTATTAAGAAGTTAAAGCAGATCAATGAAGAGCAG  314



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10556227290


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5