BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg887761 Length=234 Score E Sequences producing significant alignments: (Bits) Value AT2G39260.1 | Symbols: | binding;RNA binding | chr2:16392047-1... 361 2e-99 > AT2G39260.1 | Symbols: | binding;RNA binding | chr2:16392047-16399680 REVERSE LENGTH=3879 Length=3879 Score = 361 bits (195), Expect = 2e-99 Identities = 213/222 (96%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 1 ATGGATCATCCAGAAGATGAAACCCACAGCGAGAAACAAGACGACGAGGAAGCTCTTGCT 60 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 93 ATGGATCATCCAGAAGATGAATCCCACAGCGAGAAACAAGACGACGAGGAAGCTCTTGCT 152 Query 61 CGTCTTGAAGAGATTAAGAAGTCAGTGGAAGCTAAAATGACTCTTCGTCAAAATAATCTC 120 |||||||||||||||||||||||| | ||||||||| |||||||||||||||| |||||| Sbjct 153 CGTCTTGAAGAGATTAAGAAGTCAATTGAAGCTAAACTGACTCTTCGTCAAAACAATCTC 212 Query 121 AATCCTGAACGACCTGATTCAACATATCTTAGGACTCTGGATTCTAGTATCAAGCGGAAT 180 ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 213 AATCCTGAACGACCTGATTCAGCATATCTTAGGACTCTAGATTCTAGTATCAAGCGGAAT 272 Query 181 ACAGCAGTTATCAAGAAGTTAAAGCAGATCAATGAGGAGCAG 222 ||||||||||| ||||||||||||||||||||||| |||||| Sbjct 273 ACAGCAGTTATTAAGAAGTTAAAGCAGATCAATGAAGAGCAG 314 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10556227290 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5