BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887783
Length=480
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31960.1 | Symbols: ATGSL03, GSL03, ATGSL3 | glucan synthase... 793 0.0
AT1G05570.1 | Symbols: CALS1, GSL06, ATGSL6, ATGSL06, GSL6 | ca... 560 4e-159
> AT2G31960.1 | Symbols: ATGSL03, GSL03, ATGSL3 | glucan synthase-like
3 | chr2:13588887-13600229 FORWARD LENGTH=6067
Length=6067
Score = 793 bits (429), Expect = 0.0
Identities = 468/486 (96%), Gaps = 6/486 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCAAAGGAGAGGACCTGATCCGCCTCCGCCCCAGAGGCGGATTCTGCGGACTCAA 60
||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 52 ATGGCTCAAAGGAAAGGACCTGATCCGCCTCCGCCTCAAAGGCGGATTCTGCGGACTCAA 111
Query 61 ACTGCTGGTAATCTCGGAGAGGCTATGTTAGACAGTGAAGTGGTGCCATCGTCTCTTGTG 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 112 ACTGCTGGTAATCTCGGAGAGGCTATGTTGGACAGTGAAGTGGTGCCATCGTCTCTTGTG 171
Query 121 GAGATTGCTCCTATCCTTCGTGTAGCTAATGAAGTAGAAGCTAGTAACCCGCGTGTTGCT 180
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 172 GAGATTGCTCCGATCCTTCGTGTAGCTAATGAAGTTGAAGCTAGTAACCCCCGTGTTGCT 231
Query 181 TACTTA---CGGTTTTATGCGTTTGAGAAGGCACACAGGCTTGATCCCACATCAAGTGGA 237
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TACTTATGTCGGTTTTATGCGTTTGAGAAGGCACACAGGCTTGATCCCACATCAAGTGGA 291
Query 238 CGAGGTGTTCGCCAGTTTAAGACCGCGCTTCTTCAACGGTTAGAACGGGAGAATGAAACA 297
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 292 CGTGGTGTTCGCCAGTTTAAGACTGCGCTTCTTCAACGGTTAGAACGGGAGAATGAAACA 351
Query 298 ACTCTTGCAGGAAGGCAGAAGAGTGATGCACGCGAAATGCAAAGTTTCTATCAACACTAC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 ACTCTTGCAGGAAGGCAGAAGAGTGATGCACGCGAAATGCAAAGTTTCTATCAACACTAC 411
Query 358 TACAAGAAATACATCCAAGCTCTGCTAAACGCCGCTGACAAAGCTGAC-G--CTCAACTT 414
||||||||||||||||||||| ||| |||||||||||||||||||||| | ||||||||
Sbjct 412 TACAAGAAATACATCCAAGCTTTGCAAAACGCCGCTGACAAAGCTGACCGTGCTCAACTT 471
Query 415 ACAAAGGCATATCAAACTGCTGCTGTTCTCTTTGAAGTCTTAAAAGCTGTTAATCAGACA 474
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 472 ACAAAGGCATATCAAACTGCTGCTGTTCTCTTTGAAGTCTTGAAAGCTGTTAATCAGACA 531
Query 475 GAAGAT 480
||||||
Sbjct 532 GAAGAT 537
> AT1G05570.1 | Symbols: CALS1, GSL06, ATGSL6, ATGSL06, GSL6 |
callose synthase 1 | chr1:1647706-1659437 REVERSE LENGTH=6231
Length=6231
Score = 560 bits (303), Expect = 4e-159
Identities = 430/490 (88%), Gaps = 14/490 (3%)
Strand=Plus/Plus
Query 1 ATGGCTCAAAGGAGAGG-ACCTGATCCGCCTCCGCCCCAGAGGCGGATTCTGCGGACTCA 59
||||||||||| || || ||||||||||||||| || |||||||||||||||||||||||
Sbjct 205 ATGGCTCAAAGAAG-GGAACCTGATCCGCCTCCACCGCAGAGGCGGATTCTGCGGACTCA 263
Query 60 AACTGCTGGTAATCTCGGAGAGGCTATG-TTAGACAGTGAAGTGGTGCCATCGTCTCTT- 117
|||| ||||| |||||||||||||||| || || |||||||| || || || ||| ||
Sbjct 264 GACTGTTGGTAGTCTCGGAGAGGCTATGCTT-GATAGTGAAGTTGTTCCCTCTTCT-TTA 321
Query 118 GTGGAGATTGCTCCTATCCTTCGTGTAGCTAATGAAGTAGAAGCTAGTAACCCGCGTGTT 177
|| ||||||||||| || || ||||| ||||||||||| ||||||||||| || || |||
Sbjct 322 GTTGAGATTGCTCCGATTCTACGTGTGGCTAATGAAGTTGAAGCTAGTAATCCACGAGTT 381
Query 178 GCTTACTTACG--GTTT-TATGCGTTTGAGAAGGCACACAGGCTTGATCCCACATCAAGT 234
|||||| || | |||| || || ||||||||||| || ||||||||||| || ||||||
Sbjct 382 GCTTACCTATGTCGTTTCTACGCATTTGAGAAGGCGCATAGGCTTGATCCAACTTCAAGT 441
Query 235 GGACGAGGTGTTCGCCAGTTTAAGACCGCGCTTCTTCAACGGTTAGAACGGGAGAATGAA 294
|| || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 442 GGTCGTGGTGTTCGCCAGTTTAAGACCGCGCTTCTTCAACGATTAGAAAGGGAGAATGAA 501
Query 295 ACAACTCTT-GCAGGAAGGCAGAAGAGTGATGCACGCGAAATGCAAAGTTTCTATCAACA 353
|||||| || ||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 502 ACAACT-TTGGCAGGAAGGCAAAAGAGTGATGCACGTGAAATGCAGAGTTTCTATCAACA 560
Query 354 CTACTACAAGAAATACATCCAAGCTCTGCTAAACGCCGCTGACAAAGCTGAC-G--CTCA 410
||||||||||||||||||||||||| |||| || || || || ||||||||| | ||||
Sbjct 561 CTACTACAAGAAATACATCCAAGCTTTGCTGAATGCTGCGGATAAAGCTGACCGTGCTCA 620
Query 411 ACTTACAAAGGCATATCAAACTGCTGCTGTTCTCTTTGAAGTCTTAAAAGCTGTTAATCA 470
|||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 621 ACTTACAAAGGCCTATCAAACTGCTGCCGTTCTCTTTGAAGTCTTGAAGGCTGTTAATCA 680
Query 471 GACAGAAGAT 480
|||||||||
Sbjct 681 AACAGAAGAT 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22856536885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5