BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887791

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02100.1 | Symbols: UNE18, ORP3A | Oxysterol-binding family ...   337    1e-91


> AT5G02100.1 | Symbols: UNE18, ORP3A | Oxysterol-binding family 
protein | chr5:413520-416225 FORWARD LENGTH=1690
Length=1690

 Score =  337 bits (182),  Expect = 1e-91
 Identities = 218/234 (93%), Gaps = 8/234 (3%)
 Strand=Plus/Plus

Query  414   AGACAAAGAGCTGAGAAGAGAAGCCGATCGAGAAGAGAAACGG-CAAAGATTTGCTCCAA  472
             ||||||||||||||||||| ||| | |  ||||||||||| || |||| |||||||||||
Sbjct  1254  AGACAAAGAGCTGAGAAGAAAAG-C-A--GAGAAGAGAAA-GGCCAAAAATTTGCTCCAA  1308

Query  473   AATGGTTTGATGAAACAGAGGAAGTCACTCCTACACCATGGGGTGATCTCCAAGTGTACC  532
             ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct  1309  AATGGTTTGATGAAACAGAAGAAGTCACTCCTACACCATGGGGTGATCTCGAAGTTTACC  1368

Query  533   AATTCAATGGAAAGTACTCGGTGCACCGCGCCACAGCGGATAACTCTGAGGATACAA-CG  591
             ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct  1369  AATTCAATGGAAAGTACTCGGTGCACCGCGCCACAGCTGAAAACTCTGAGGATACAACCG  1428

Query  592   AATGTGAAGTTGAACCAATTCAACCCTTGGCAATTCCAAGATCTCTCTGCTTAA  645
              |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1429  -ATGTGAAGTTGACCCAATTCAACCCTTGGCAATTCCAAGATCTCTCTGCTTAA  1481


 Score =  303 bits (164),  Expect = 1e-81
 Identities = 186/197 (94%), Gaps = 0/197 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTGAGTTGATGGAATACTCGCATCTGGTGGACATGGCTGACAAAAATGAAGATCCT  60
            |||||||||||||||||||||||  || || | |||||||||||||||| ||||||||||
Sbjct  420  ATGGCTGAGTTGATGGAATACTCATATTTGCTAGACATGGCTGACAAAACTGAAGATCCT  479

Query  61   TACATGAGTATGGTATATGCATCATCATGGGCTATCTCTGTGTATTATGCTTACCAGCGT  120
            |||||| |||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct  480  TACATGCGTATGGTATATGCATCATCATGGGCTATATCTGTGTATTACGCCTACCAGCGT  539

Query  121  ACCTGGAAGCCGTTCAATCCAATTCTCGGTGAGACTTACGAGATGACTAATCATAATGGG  180
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  540  ACCTGGAAGCCGTTCAATCCAATTCTCGGTGAGACTTATGAGATGACTAATCATAATGGG  599

Query  181  ATCAATTTTATAGCTGA  197
            |||||||||||||||||
Sbjct  600  ATCAATTTTATAGCTGA  616


 Score =  226 bits (122),  Expect = 2e-58
 Identities = 130/134 (97%), Gaps = 0/134 (0%)
 Strand=Plus/Plus

Query  237  GACCCGAGTGACACTTAAAAGAGATGGTGTGGTTCTTGATCTTATACCTCCCCTGACAAA  296
            ||| |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct  743  GACACGAGTGACACTTAAAAGAGATGGTGTCGTTCTTGATCTTGTACCTCCACTGACAAA  802

Query  297  GGTTCATAACCTTATCTTCGGTCGAACATGGGTCGATTCGCCAGGAGAGATGGTCATGAC  356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  803  GGTTCATAACCTTATCTTCGGTCGAACATGGGTCGATTCGCCAGGAGAGATGGTCATGAC  862

Query  357  GAACCTGACCACTG  370
            ||||||||||||||
Sbjct  863  GAACCTGACCACTG  876



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31145171140


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5