BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887793
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33000.1 | Symbols: | ubiquitin-associated (UBA)/TS-N domai... 944 0.0
> AT2G33000.1 | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing
protein-related | chr2:14006135-14008535 FORWARD
LENGTH=1800
Length=1800
Score = 944 bits (511), Expect = 0.0
Identities = 679/762 (89%), Gaps = 4/762 (1%)
Strand=Plus/Plus
Query 219 CTTGCCGGAGGTTTCGGTGAGCGAGGAATCTGCTGAGGCGCCGCCTAATTTGCCAGTGCA 278
|||||||| |||||||| |||| |||||||||||||||||||||| |||| ||||| |||
Sbjct 828 CTTGCCGGTGGTTTCGGCGAGCCAGGAATCTGCTGAGGCGCCGCCGAATTCGCCAGAGCA 887
Query 279 ACCGTCTCAATTCAATTATGAACGCATCTCTTCATTCAGTAATGTGGTTGGTGGAGCGAC 338
|||||||| | | || ||||| | |||||||||||| | | | || | || ||||||
Sbjct 888 ACCGTCTCTACTGAAAAATGAATGGATCTCTTCATTCTGCGAGGCGGCTAGTACAGCGAC 947
Query 339 TAGAGAGGAGGCAATCGATTGCCTTAAACTCTGCAATTGGGATGTAGACCGAGCCGTCGG 398
|||||||||||||||| ||||||||||| ||||||| ||||||||| | |||||| ||||
Sbjct 948 TAGAGAGGAGGCAATCTATTGCCTTAAAGTCTGCAACTGGGATGTACATCGAGCCATCGG 1007
Query 399 CTTTTATATGGATGG-GTTCTCAGAGCATGAAATGTCAGCAGAAAT-AGCTATGAGTTTG 456
|||||||||||| || |||||||||||| ||| ||||| | | | | ||||||||||
Sbjct 1008 CTTTTATATGGA-GGACTTCTCAGAGCATCAAACGTCAGTGGCAGTCA-ATATGAGTTTG 1065
Query 457 AAGGAGAACAGAGAGCTGCCTCTTCCATCCATCGAATTACCTTCACAATCGCAGTTTCAG 516
|||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct 1066 AAGGAGAACAGAAAGCTGCCTCTTTCATCCATCGAATTACCTTCTCAATCGCAGTTTGAG 1125
Query 517 GCTTCACTTGGTTACTTGAAAGAAGGAAGCACTTCTAGTTTGATGGAGGTTGATCCGACC 576
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1126 GCTTCACTTGGTTACTTGAAAGAAGGAAGCACTTCTAGTTTGTTGGAGGTTGATCCGACC 1185
Query 577 AAGTCAGAAAGGTCACTCGAAGAGGCTGGTAAAGAAAACGCCGCAGTAGCTATTCTTGGA 636
||| | ||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 1186 GAGTTAAAAAGGTCACTCGAAGAGGCTGGTGAAGAAAACGCCGCAGTAGCTATTCCTAGA 1245
Query 637 AAGGCGTCGTCTCAAGTGGATGGTGAGGGTGTGGAGAAAGACTCAAGCATGGAGACATTC 696
| | | ||||||||||| |||||| ||||| | ||| |||||||||||||||||||||||
Sbjct 1246 ATGACATCGTCTCAAGTAGATGGTAAGGGTATTGAGGAAGACTCAAGCATGGAGACATTC 1305
Query 697 CCTGATCCTGTTGCTTACCAAGACATGATTGTTGTGGGGCCTCAAGCTGCGGGGAGTACT 756
|||||||||||||| |||||||||| ||| |||||||||||| ||||| ||||| ||||
Sbjct 1306 CCTGATCCTGTTGCCTACCAAGACAGGATAATTGTGGGGCCTCGAGCTGGGGGGACTACT 1365
Query 757 ATTACAATAACTATCATCTTGGCCAATGGGCGATTGGTAAATATTCCTTTTAGATCAAAC 816
|||||| | |||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1366 ATTACATTGACTATCCTCTTGGCCAATACGCGATCGGTAAATATTCCTTTTAGATCAAAC 1425
Query 817 CAAACCGTCAGAGACATCCGAGATGCTATTGACGAGCTAACACCAGATTACGACAAAGAC 876
||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 1426 CAAACTGTCAGAGACATCCGTGATGCCATTGACGAGCTAACACCAGATTACGAGAAAGAC 1485
Query 877 TACATTTTGCAATCAGGGGCTGAAGTAGATTACATGGATCCGGATATTACTGTACACGAA 936
||||||||||||||| ||||||||||| |||||||||||| || |||||||||||||||
Sbjct 1486 TACATTTTGCAATCAATGGCTGAAGTAGTTTACATGGATCCAGACATTACTGTACACGAA 1545
Query 937 ATATCTACTGGTGATACAACTCTCCTCCAGATCTACCTGTAG 978
|||||||||||| ||||||||||||||||||||||||||||
Sbjct 1546 ATATCTACTGGTTCTACAACTCTCCTCCAGATCTACCTGTAG 1587
Score = 244 bits (132), Expect = 9e-64
Identities = 173/192 (90%), Gaps = 5/192 (3%)
Strand=Plus/Plus
Query 1 TTGGTCGAGCGCCGTCCACCGCCTTC-TCAAAAGAAGTCGAATCCTCTACGATTAGTTTC 59
||||||||||||||| || |||| || ||||||||||||||||||||||||||||| |||
Sbjct 475 TTGGTCGAGCGCCGTGCAACGCC-TCTTCAAAAGAAGTCGAATCCTCTACGATTAGATTC 533
Query 60 AAAACCGCAGTTTCAAGATTACTCGAAACCACTCAAAATCGGGAGCTCTTCTTTTGATTC 119
|||| ||| ||||| |||||||||||||||||||| ||||||||| ||||||| ||| ||
Sbjct 534 AAAATCGCGGTTTCTAGATTACTCGAAACCACTCAGAATCGGGAGATCTTCTTCTGACTC 593
Query 120 GATGGAGGTTGACTCGAGAGGAGAACATATCCCTGAAGCTGTACC---TCTAATGGCGTC 176
|||||| |||||||||| ||||||||| |||||||||||| |||| ||||||||||||
Sbjct 594 GATGGAAGTTGACTCGACAGGAGAACAGATCCCTGAAGCTATACCACCTCTAATGGCGTC 653
Query 177 ATCTCAAGTCAA 188
||||||||||||
Sbjct 654 ATCTCAAGTCAA 665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5