BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887794
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32990.1 | Symbols: AtGH9B8, GH9B8 | glycosyl hydrolase 9B8 ... 2516 0.0
> AT2G32990.1 | Symbols: AtGH9B8, GH9B8 | glycosyl hydrolase 9B8
| chr2:14003250-14006017 FORWARD LENGTH=1862
Length=1862
Score = 2516 bits (1362), Expect = 0.0
Identities = 1511/1584 (95%), Gaps = 6/1584 (0%)
Strand=Plus/Plus
Query 1 ATGACTGTGATGGATCACCGACACAAGCCATGCCATTTTCTCCTCCTCCTTCTCCTTCTG 60
|||||||||||| ||||||||||||||| ||| || ||| | ||||| | |||||||||
Sbjct 112 ATGACTGTGATGAATCACCGACACAAGCAATGTCA-TTT-T-CTCCT-C--CTCCTTCTG 165
Query 61 ATCACTGTCTTCTCCGCCGTGTTGGCCGGTGTTTCGTCGGAGACAGACGTCGGAAGGTTT 120
|||||||||||||| |||| ||||| |||||||| || ||||||||||||||| |||||
Sbjct 166 ATCACTGTCTTCTCTGCCGCGTTGGATGGTGTTTCTTCCGAGACAGACGTCGGAGGGTTT 225
Query 121 GACTACGGTGAAGCATTGTCTAAAAGCTTACTCTACTTTGAAGCTCAGAGATCAGGGAGA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 226 GACTACGGTGAAGCATTGTCTAAAAGCTTACTCTACTTTGAAGCTCAGAGATCAGGAAGA 285
Query 181 CTTCCGTATAACCAGCGCGTGACGTGGCGTGATCACTCTGGTCTCACCGATGGTCTTGAA 240
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 286 CTTCCGTACAACCAGCGCGTGACTTGGCGTGATCACTCTGGTCTCACCGATGGTCTTGAA 345
Query 241 CAAGGGGTGGATTTAGTGGGAGGATATCACGACGCCGGTGATCATGTTAAATTTGGACTG 300
|||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 346 CAAGGGGTTGATTTAGTGGGAGGATATCACGACGCCGGAGACCATGTTAAATTTGGACTT 405
Query 301 CCCATGGCTTTCACGGTGACGATGTTATCATGGAGTGTAATAGAGTACGGTGACTCACTC 360
|| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 406 CCGATGGCTTTTACGGTGACAATGTTGTCATGGAGTGTAATAGAGTACGGTGACTCACTC 465
Query 361 GCTTCCACCGGCGAGTTATCTCACGCGCTTGAAGCCATCAAGTGGGGAACAGATTACTTC 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 466 GCTTCCACCGGAGAGTTATCTCACGCGCTTGAAGCCATCAAGTGGGGAACAGACTACTTC 525
Query 421 ATCAAGGCACACACAAGCCCAAATGTCTTATGGGCCGAAGTAGGCGACGGTGACACTGAC 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 526 ATCAAGGCACACACAAGCCCAAATGTCTTATGGGCCGAAGTTGGCGACGGTGACACTGAC 585
Query 481 CACTACTGTTGGCAAAGACCGGAGGACATGACGACTTCACGGCGAGCTTTTAAGATCGAC 540
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 586 CACTACTGTTGGCAAAGACCGGAGGACATGACGACTTCACGGAGAGCTTTCAAGATCGAT 645
Query 541 GAGAACAATCCGGGATCAGATATCGCCGGGGAAACCACCGCGGCTATGGCGGCAGCTTCG 600
||||| |||||||||||||||||||| || ||||| | |||||||||||||||||||||
Sbjct 646 GAGAATAATCCGGGATCAGATATCGCTGGAGAAACTGCGGCGGCTATGGCGGCAGCTTCG 705
Query 601 ATCGTTTTCCGTTCAACAAATCCACATTACTCTCACCTTCTCTTGCACCATGCCCAACAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 ATCGTTTTCCGTTCAACAAATCCACATTACTCTCACCTTCTCTTGCACCATGCCCAACAA 765
Query 661 TTGTTTGGGTTTGGAGACAAGTACAGAGGAAAATACGATGAGAGTCTCAAAGTTGTGAAA 720
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 766 TTGTTTGAGTTTGGAGACAAGTACAGAGGAAAATACGATGAGAGTCTAAAAGTTGTGAAA 825
Query 721 AGTTATTATGCCTCGGTGAGTGGGTACATGGACGAGCTTTTATGGGGTGCCACGTGGCTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 826 AGTTATTATGCCTCGGTGAGTGGGTACATGGACGAGCTTTTATGGGGTGCCACTTGGCTT 885
Query 781 TATCGAGCCACCGACAATGAGCACTATATGAGTTATGTGGTTGACATGGCTCACCAACTA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 TATCGAGCCACCGACAATGAGCACTATATGAGTTATGTGGTTGACATGGCTCACCAACTA 945
Query 841 GGTGGCCTTTCTTGGGCCATGTCCGAGTTTAGCTGGGACGTCAAGTACGCCGGCGTTCAG 900
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 946 GGTGGCCTTTCTTGGGCCATGTCCGAGTTTAGCTGGGACGTCAAGTTCGCCGGTGTTCAA 1005
Query 901 CTCCTCGCTTCCATGTTGCTAAAAGAAGAAAAGCACAAGCAACATTCTAAAGTCCTACAA 960
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 CTCCTAGCTTCCATGTTGCTAAAAGAAGAAAAGCACAAGCAACATTCTAAAGTCCTACAA 1065
Query 961 CAATACAAATCAAAGGCGGATCATTACCTATGCTCAATTCTCAACAAGAATATCAACGGC 1020
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1066 CAATACAAATCAAAGGCGGATCATTACCTATGCTCAATTCTCAACAAGAACATCAACGGC 1125
Query 1021 ACAAACGTTCAGCGAACTCCGGCTGGTTTACTCTACGTCCGGCAATGGAACAATATGCAA 1080
|||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 1126 ACAAACGTCCAGCGAACTCCTGCCGGTTTACTCTACGTCCGACAATGGAACAATATGCAA 1185
Query 1081 TACGTATCCACCGCATCTTTCCTCCTAACCGTATATTCGGATCATCTCCGAAAATCAAAC 1140
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1186 TACGTATCCACAGCATCTTTCCTCCTAACCGTATATTCTGATCATCTCCGAAAATCAAAC 1245
Query 1141 ACCGATCTCGAGTGTCACGAAGGAACCGTAACTCCTGATGAGATGCTTGGCTTTGCGAAA 1200
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1246 ACCGATCTCGAGTGTCACGAAGGAACCGTAACTCCTGACGAGATGCTTGGCTTTGCGAAA 1305
Query 1201 TCCCAAATCGATTACATTTTAGGATCGAATCCGATGGAAACAAGCTATCTTGTCGGGTAC 1260
|| ||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||
Sbjct 1306 TCTCAAATCGATTACATTTTAGGATCAAATCCAATGGAAACAAGTTATCTAGTCGGGTAC 1365
Query 1261 GGTCCAAAATACCCGACTAGGGTTCATCATCGAGGCGCGTCTATCGCTTCTTTTAAAGAA 1320
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 GGTCCAAAATACCCGATTAGGGTTCATCATCGAGGCGCGTCTATCGCTTCTTTTAAAGAG 1425
Query 1321 CACAAAGGGTTTATTGGATGTACTCAAGGATATGATAATTGGTACGGACGGTCTGAGCCA 1380
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1426 CACAAAGGTTTTATAGGATGTACTCAAGGATATGATAATTGGTATGGACGGTCCGAGCCA 1485
Query 1381 AATCCGAGTGTTTTAGTCGGGGCTTTGGTCGGAGGGCCGGATGAACATGATGAATTTGAT 1440
||||||||||||||||||||||||||||| ||||| |||||| | || ||||| ||||||
Sbjct 1486 AATCCGAGTGTTTTAGTCGGGGCTTTGGTTGGAGGACCGGATCACCAGGATGATTTTGAT 1545
Query 1441 GACCGGAGGGATAATTACGTTCAAACAGAGGCTTGTACGTACAATACTGCTCCTTTGGTC 1500
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1546 GACCGGAGGGGTAATTACGTTCAAACGGAGGCTTGTACGTACAATACTGCTCCTTTGGTC 1605
Query 1501 GGTGTGTTTGCGAGACTTATAGAGCTTGAGGAGCAAAAACTTGAAGAAGAAGATGTGAGC 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 GGTGTGTTTGCGAGACTTATAGAGCTTGAGGAGCAAAAACTTGAAGAAGAAGATGTGAGC 1665
Query 1561 TTGGTTGCAACTTATAAGAGATAG 1584
||||||||||||||||||||||||
Sbjct 1666 TTGGTTGCAACTTATAAGAGATAG 1689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5