BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887801
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25180.1 | Symbols: CYP82G1 | cytochrome P450, family 82, su... 798 0.0
> AT3G25180.1 | Symbols: CYP82G1 | cytochrome P450, family 82,
subfamily G, polypeptide 1 | chr3:9167285-9169282 REVERSE LENGTH=1718
Length=1718
Score = 798 bits (432), Expect = 0.0
Identities = 537/587 (91%), Gaps = 9/587 (2%)
Strand=Plus/Plus
Query 3 TCTTACATTAACGGGATCAGACAGCACATCCATCACTCTT-ACATGGGCAGTATCGCTGC 61
||| |||||||| |||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 939 TCTCACATTAACAGGATCAGACAGCACATCCATCACT-TTGACATGGGCGGTATCGCTGC 997
Query 62 TACTCAACAATCCAGCTACTTTAAAAGCAGCACAAGAAGAGATTGACAATTGTGTCGGGA 121
||||||||||||||||| ||||| |||||||||||||||||||||| ||| ||||||| |
Sbjct 998 TACTCAACAATCCAGCTGCTTTAGAAGCAGCACAAGAAGAGATTGATAATAGTGTCGGCA 1057
Query 122 AAGGTAGATGGGTTGAAGAATCCGATATA-AGAAACCTCAATTACCTACAAGCTATTGCT 180
||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||| |
Sbjct 1058 AAGGTAGATGGATTGAAGAATCCGATATACA-AAACCTCAAGTACCTACAAGCTATTGTT 1116
Query 181 AAGGAAACTCACCGACTTTACCCGCGGGCTCCTCTTACAAGAATCCGCGAAGCACGTGAA 240
|||||||| |||||||||||||||| ||||||||| ||| ||||||||||||||||||||
Sbjct 1117 AAGGAAACGCACCGACTTTACCCGCCGGCTCCTCTAACAGGAATCCGCGAAGCACGTGAA 1176
Query 241 GATTGTTTCGTGGGAGGATACCGTGTTGAGAAAGGCATACGCTTGCTCGTAAACATATGG 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1177 GATTGTTTCGTGGGAGGATACCGTGTTGAGAAAGGCACACGCTTGCTCGTAAACATATGG 1236
Query 301 AAACTTCATAGGGATCCCATGATCATTTGGCCTGACCCCAAAACCTTTAAGCCTGAGAGG 360
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1237 AAACTTCATAGGGATCCCAAGATC---TGGCCTGACCCCAAAACCTTTAAGCCTGAGAGG 1293
Query 361 TTCATGGAGGAGGAATCACAATGTGGAAAGGGCGACTTTGAGTACATTCCATTCATTTCA 420
||||||||||| |||||||||||| |||| || ||||||| |||||||| ||| |||
Sbjct 1294 TTCATGGAGGATAAATCACAATGTGAAAAGAGCAACTTTGAATACATTCCTTTCGGTTCG 1353
Query 421 GGAAGAAGGTCGTGTCCAGGGA-TCAATCTAGATCTAAGAGTTGTTCACATCGTGTTGGC 479
||||| ||||||||||| |||| ||||||| | |||||||||||| ||| | || |||||
Sbjct 1354 GGAAGGAGGTCGTGTCC-GGGAGTCAATCTTGGTCTAAGAGTTGTACACTTTGTATTGGC 1412
Query 480 TCGGTTGCTTCAGGGGTTTGAGTTACGCAAAGTATCTGGTGAACCATTGGATATGGCTGA 539
| | |||||||| ||||||||||||| |||||| |||| ||||||| |||||||||||||
Sbjct 1413 TAGATTGCTTCAAGGGTTTGAGTTACACAAAGTGTCTGATGAACCACTGGATATGGCTGA 1472
Query 540 AGGGCCTGGTTTAGCCTTGCCAAAGATTAACCCGGTCGAAGTAGTTG 586
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 AGGGCCTGGTTTAGCCTTGCCAAAGATTAACCCGGTCGAAGTAGTTG 1519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5