BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887802

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G71110.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   333    7e-91
  AT5G24050.1 | Symbols:  | Domain of unknown function (DUF313)  ...  86.1    2e-16


> AT1G71110.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G12400.1); Has 
173 Blast hits to 169 proteins in 21 species: Archae - 0; 
Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 165; Viruses 
- 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:26818083-26821004 
FORWARD LENGTH=1987
Length=1987

 Score =  333 bits (180),  Expect = 7e-91
 Identities = 215/231 (93%), Gaps = 5/231 (2%)
 Strand=Plus/Plus

Query  49   TCACCGAATTTT-GAATCATGGAAAGGTGGAATCTCATTAGCACCAGGACCT---TCAGC  104
            |||||||||||| ||| |||||||||||||||||||||||||||||||||||   || | 
Sbjct  279  TCACCGAATTTTGGAA-CATGGAAAGGTGGAATCTCATTAGCACCAGGACCTGAATCTGA  337

Query  105  TGATGATGTCTCTGATTACCTCGTCTTAGCAGCTCATAGAACCAAGAGACCTGACATTCT  164
            ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  338  TGATGTTGTCTCTGATTACCTCCTCTTAGCAGCTCATAGAACCAAGAGACCTGACATTCT  397

Query  165  TAGAGCTTTTAAGCCTTACCATGGCGGCTGGAACATCACCAATAATCATTATTGGGCTTC  224
            |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct  398  TAGAGCTTTTAAGCCTTACCATGGTGGCTGGAACATCACCAATAATCACTATTGGGCTTC  457

Query  225  TGTTGGATTCACAGGTACTCCTGGTTTCATTCTAGCTGCTATTTGGCTCTT  275
            ||||||||| |||||| ||||||||||||| ||||||| ||| ||||||||
Sbjct  458  TGTTGGATTTACAGGTGCTCCTGGTTTCATACTAGCTGTTATCTGGCTCTT  508


> AT5G24050.1 | Symbols:  | Domain of unknown function (DUF313) 
 | chr5:8128353-8129402 REVERSE LENGTH=1050
Length=1050

 Score = 86.1 bits (46),  Expect = 2e-16
 Identities = 54/58 (93%), Gaps = 0/58 (0%)
 Strand=Plus/Plus

Query  292  GATCGAAGACCCACAAAACCATCTTCAACGGCTAACTTCTTCATGTTTCATCGCCGCT  349
            |||||||||||||||||||||||||||| ||||| | |||||||||||||| ||||||
Sbjct  288  GATCGAAGACCCACAAAACCATCTTCAAGGGCTATCCTCTTCATGTTTCATTGCCGCT  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16437553923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5