BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887803

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32370.1 | Symbols: HDG3 | homeodomain GLABROUS 3 | chr2:137...   457    4e-128
  AT1G05230.1 | Symbols: HDG2 | homeodomain GLABROUS 2 | chr1:151...   178    4e-44 


> AT2G32370.1 | Symbols: HDG3 | homeodomain GLABROUS 3 | chr2:13740878-13746286 
FORWARD LENGTH=2863
Length=2863

 Score =  457 bits (247),  Expect = 4e-128
 Identities = 334/375 (89%), Gaps = 9/375 (2%)
 Strand=Plus/Plus

Query  1    ATGTCTCAGTCAAACATGGTACCAGTGGTTAACAACGGAGATGGTGA-TA--ACAACGAA  57
            |||||||||||||||||||||||||||| ||||||||||||     |  |  ||||||||
Sbjct  240  ATGTCTCAGTCAAACATGGTACCAGTGGCTAACAACGGAGACAACAACAACGACAACGAA  299

Query  58   AACAACAACGTTAGCAACAACAATGGTGGAGCTGACAACACTAATGCTGGAAATCATTCT  117
            |||||||||   | |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct  300  AACAACAACAACAACAACAACAATGGTGGAACTGACAACACTAATGCTGGAAATGATTCT  359

Query  118  GGAGATCAAGAACTCGAAAGTGGGAATACCTCAAGTGGCAATCATGGAGAAGGGTTGCGA  177
            |||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct  360  GGAGATCAAGATTTCGACAGTGGGAATACCTCAAGTGGCAATCATGGAGAAGGGTTGGGA  419

Query  178  AACAACCAAGCTCCTCCTCCTAAGaa-aaaaaGATACCATCGTCACAGCCAAATTCAGAT  236
            ||||| |||||||||| || |||||| ||||| |||| ||||||||| |||| |||||||
Sbjct  420  AACAATCAAGCTCCTCGTCATAAGAAGAAAAA-ATACAATCGTCACACCCAACTTCAGAT  478

Query  237  T-CAGGAGTTGGAAGCATTCTTCAAAGAGTGTCCTCACCCAGATGACAAGCAAAGGAACG  295
            | | |||| ||||||| ||||||| |||||||||||||||||||||||| |||||| |||
Sbjct  479  TTC-GGAGATGGAAGCTTTCTTCAGAGAGTGTCCTCACCCAGATGACAAACAAAGGTACG  537

Query  296  CAC-TTAGCGTTCAATTGGGATTGGACCCTGTTCAGGTCAAGTTCTGGTTCCAGAACAAA  354
             || |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct  538  -ACCTTAGCGCTCAATTGGGATTGGACCCTGTTCAGATCAAATTCTGGTTCCAGAACAAA  596

Query  355  CGCACTCAAAGCAAG  369
            |||||||||| ||||
Sbjct  597  CGCACTCAAAACAAG  611


> AT1G05230.1 | Symbols: HDG2 | homeodomain GLABROUS 2 | chr1:1512901-1517248 
REVERSE LENGTH=2679
Length=2679

 Score =  178 bits (96),  Expect = 4e-44
 Identities = 166/198 (84%), Gaps = 12/198 (6%)
 Strand=Plus/Plus

Query  176  GAAACAACCAAGCTCCTC--C-TCCTAAGaa-aa-aaa-GATACCATCGTCACAGCCAAA  229
            ||||| |||||| |||||  | |||||| || || ||| |||| ||||| |||| |||| 
Sbjct  267  GAAACGACCAAGATCCTCTTCATCCTAACAAGAAGAAACGATATCATCGACACACCCAAC  326

Query  230  TTCAGATTCAGGAGTTGGAAGCATTCTTCAAAGAGTGTCCTCACCCAGATGACAAGCAAA  289
            ||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  327  TTCAGATCCAGGAGATGGAAGCGTTCTTCAAAGAGTGTCCTCACCCAGATGACAAGCAAA  386

Query  290  GGAACGCA-CTTAGC-GTTCAATTGGGATT-GGACCCTGTTCAGGTCAAGTTCTGGTTCC  346
            ||||  || || ||| ||  |||||  ||| ||| ||| |||||||||| ||||||||||
Sbjct  387  GGAAA-CAGCTAAGCCGTG-AATTGA-ATTTGGAACCTCTTCAGGTCAAATTCTGGTTCC  443

Query  347  AGAACAAACGCACTCAAA  364
            | |||||||| || ||||
Sbjct  444  AAAACAAACGTACCCAAA  461



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17945586393


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5