BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887806
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32340.1 | Symbols: | TraB family protein | chr2:13732247-1... 490 9e-138
AT1G05270.1 | Symbols: | TraB family protein | chr1:1531641-15... 211 8e-54
> AT2G32340.1 | Symbols: | TraB family protein | chr2:13732247-13734534
FORWARD LENGTH=1256
Length=1256
Score = 490 bits (265), Expect = 9e-138
Identities = 315/339 (93%), Gaps = 4/339 (1%)
Strand=Plus/Plus
Query 522 GCTGAAAGACATGAGCGATGCTGATATGCTGACAATGATGATTCAAGAAATGAGCAAGGA 581
|||||||||| || |||||| |||||||||||| || ||||||||||||||||| |||
Sbjct 747 GCTGAAAGACCTGGGCGATGGGGATATGCTGACATTGGCGATTCAAGAAATGAGCACGGA 806
Query 582 ATTTCC-ATCTCTCATGGAGACACTTGTGCATGAGCGAGATAAGTACATGGCATATCTAT 640
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 807 ATTTCCGA-CTCTCATGGAGACACTTGTGCATGAGCGAGATAAGTACATGGCATATCAAT 865
Query 641 TGTTGAGACTTGCAAGTGAGCATAGTTCAGTCGTGGCAGTTGTCGGTAGAGGGCATCTTC 700
|||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 866 TGTTGAGAATTGCAAGTGAGCATAGTTCAGTCGTGGCAGTTGTGGGTAGAGGACATCTTC 925
Query 701 AAGGGATCAAGAAGAATTGGAACCAACCTATAAACATAAAGGAACT-ATTGGAGTTACCG 759
|||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 926 AAGGGATCAAGAAGAATTGGAACCAAACTATAAACATAAAGGAACTGAT-GGAGTTACCG 984
Query 760 ACAAATGAATCGATTTTTACTGTAAAGAATATTCTGAAATATCTGGTGGTTGTAGTCGCC 819
||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 985 ACAAATGAATCCATATTTACTGTAAAGAATATTCTGAAATATATGGTGGTTGTAGTCGTT 1044
Query 820 GGGACAGCCATAGTTTCCGGCATGTATCTTGCTAAGTAA 858
|| ||||||||||||||||| ||||||||||||||||||
Sbjct 1045 GGAACAGCCATAGTTTCCGGAATGTATCTTGCTAAGTAA 1083
Score = 353 bits (191), Expect = 1e-96
Identities = 305/357 (85%), Gaps = 19/357 (5%)
Strand=Plus/Plus
Query 68 GAGATTTTTTGTTAAGCGAA-AGCATAGTAAATGTGGAGAAGGAGGAGCTTCTTAGGGAG 126
||||||||| ||||| | || ||| |||| |||||||| |||||||| |||| |||||||
Sbjct 29 GAGATTTTTCGTTAA-CCAACAGCTTAGTGAATGTGGACAAGGAGGACCTTCGTAGGGAG 87
Query 127 GAAGTAGATAGCAACGCTA-GTTCAGTGATTACCGGCGACGATTCGATCGGTGAAAGTGG 185
|||| ||||||| |||| | |||||||||||| | ||||| ||||||| |||| |||||
Sbjct 88 GAAGCAGATAGCGACGC-AGGTTCAGTGATTATCTGCGACCATTCGATATGTGATAGTGG 146
Query 186 TGATGATGATATCTGTGGTGTAGCGGATTATGTTGA--GTGT-GCGTTTGAGACGAGGAC 242
||||| |||||| || | |||||| ||||||||||| |||| ||| || || || |||
Sbjct 147 TGATGGTGATATATGCGCTGTAGCAGATTATGTTGAGTGTGTGGCG-GTG-GA-GACGAC 203
Query 243 GGAGAAGTTGGAGCTGCCTGAGGAATTTGCGAAAAGCGTTATGGTTCTAACGTGTGAGTC 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 204 GGAGAAGTTGGAGCTGCCTGAGGAATTTGCGAAAAGCGTTATGGTTCTAACGTGCGAATC 263
Query 303 CACAGTTGAAGGTGGATCTTGTGATGTTTACTTGGTTGGCACTGCTCATGTATCACAGAG 362
||||| ||| ||||||||||||||||| ||||| |||||||||||||| ||||||||| |
Sbjct 264 CACAGCTGAGGGTGGATCTTGTGATGTGTACTTAGTTGGCACTGCTCACGTATCACAG-G 322
Query 363 CCTCCTTGAATCATGTCGAGAAGTTGAAACTGTAATCAGATCCTTGAAACCGCAGGC 419
|||||||||||||||||||| |||||||||| |||||||||| |||||
Sbjct 323 --------AATCATGTCGAGAAGTTGAAGCTGTAATCAGCGCCTTGAAACCACAGGC 371
Score = 159 bits (86), Expect = 3e-38
Identities = 102/109 (94%), Gaps = 4/109 (4%)
Strand=Plus/Plus
Query 416 AGGCCGCCAAGAAGCTTGAGGTTTTTCCTGGTGCTGAATTTCGTGTGGCATTTGAAGAGG 475
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 527 AGGCCGCCAAGAAGCTTGAGGTTTTTCCTGGTGCTGAATTTCGTGTGGGATTTGAAGAGG 586
Query 476 CAAACAAATATGGTGGT-GCAGTGTTTCCTGGCGATCG-TCCAGTACAG 522
|||||||||||||||| | |||||||| ||||||||| || |||||||
Sbjct 587 CAAACAAATATGGTGGCAG-AGTGTTTCTTGGCGATCGCTC-AGTACAG 633
> AT1G05270.1 | Symbols: | TraB family protein | chr1:1531641-1534410
REVERSE LENGTH=1386
Length=1386
Score = 211 bits (114), Expect = 8e-54
Identities = 201/242 (83%), Gaps = 10/242 (4%)
Strand=Plus/Plus
Query 522 GCTGAAAGACAT-GAGCGATGCT-GATATGCTGACAATGATGATTCAAGAAATGAGCAAG 579
||||||||| || || | ||| | |||||| |||| || ||||||||||||||||||||
Sbjct 879 GCTGAAAGATATGGA-CAATG-TGGATATGGTGACTTTGGTGATTCAAGAAATGAGCAAG 936
Query 580 GAATTTCCATCTCTCATGGAGACACTTGTGCATGAGCGAGATAAGTACATGGCATA-TCT 638
||||||||| |||||||||| ||| |||||||||||||||| |||||||||||| |||
Sbjct 937 GAATTTCCAACTCTCATGGATACAATTGTGCATGAGCGAGACCAGTACATGGCATCCTCT 996
Query 639 ATTGTTGAGACTTGCAAGTGAGCATAGTTCAGTCGTGGCAGTTGTCGGTAGAGGGCATCT 698
||| ||||| |||||||||| |||||||| || || |||||| |||| | ||| ||| |
Sbjct 997 -TTGCTGAGAGTTGCAAGTGACCATAGTTCGGTTGTAGCAGTTATCGGAAAAGGACATAT 1055
Query 699 TCAAGGGA-TCAAGAAGAATTGGAACCAACCTATAAAC-ATAAAGGAACTATTGGAGTTA 756
| || ||| |||||||||||||||| |||||||| | | || || || ||| ||||| ||
Sbjct 1056 T-AATGGAATCAAGAAGAATTGGAAGCAACCTATTA-CGATGAATGATCTAATGGAGATA 1113
Query 757 CC 758
||
Sbjct 1114 CC 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5