BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887808

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32310.1 | Symbols:  | CCT motif family protein | chr2:13724...   268    1e-71


> AT2G32310.1 | Symbols:  | CCT motif family protein | chr2:13724394-13726374 
FORWARD LENGTH=1262
Length=1262

 Score =  268 bits (145),  Expect = 1e-71
 Identities = 223/260 (86%), Gaps = 8/260 (3%)
 Strand=Plus/Plus

Query  3     atcatcatcatcatcatcaGCAAACCAACATGAACA--AGTGAACTCAGTTGTACCACCA  60
             |||||||||||||||||||| ||||||||| || ||  | |||||  |||||||||||||
Sbjct  831   ATCATCATCATCATCATCAGAAAACCAACAAGATCATCA-TGAAC-AAGTTGTACCACCA  888

Query  61    TATCTACATCATCCATTGACCATAGATAGAAGTCAAGACAGAGAGGAAGCAAAACAGAGA  120
              ||  || | |||||||||||||  | |||| |||| || ||||||||||||||||||||
Sbjct  889   AATGAACTTGATCCATTGACCATCCAGAGAAATCAATACCGAGAGGAAGCAAAACAGAGA  948

Query  121   TATTTTGAGAAGAAGAGCCGCCGCAAATTCATGAAG-CTACACCGATATGAAAGTCGATC  179
             |||||||||||||||||  | ||||||||| ||||| | ||||||||||||||||||| |
Sbjct  949   TATTTTGAGAAGAAGAGGAGTCGCAAATTCGTGAAGGC-ACACCGATATGAAAGTCGAGC  1007

Query  180   A-AACGCAGCTGTGAAGAAAAAACGAAGAAGAGGTAAATTTGTGAAAGAGGATGACGAAA  238
             | ||  |||||| ||||||||||||||| ||||||| |||||||||| | ||||||||| 
Sbjct  1008  ACAAA-CAGCTGCGAAGAAAAAACGAAGCAGAGGTAGATTTGTGAAAAACGATGACGAAT  1066

Query  239   TCGGCAATGATCCCCCAGCT  258
             ||| |||||| |||||||||
Sbjct  1067  TCGACAATGACCCCCCAGCT  1086



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12215063007


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5