BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg887808 Length=267 Score E Sequences producing significant alignments: (Bits) Value AT2G32310.1 | Symbols: | CCT motif family protein | chr2:13724... 268 1e-71 > AT2G32310.1 | Symbols: | CCT motif family protein | chr2:13724394-13726374 FORWARD LENGTH=1262 Length=1262 Score = 268 bits (145), Expect = 1e-71 Identities = 223/260 (86%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 3 atcatcatcatcatcatcaGCAAACCAACATGAACA--AGTGAACTCAGTTGTACCACCA 60 |||||||||||||||||||| ||||||||| || || | ||||| ||||||||||||| Sbjct 831 ATCATCATCATCATCATCAGAAAACCAACAAGATCATCA-TGAAC-AAGTTGTACCACCA 888 Query 61 TATCTACATCATCCATTGACCATAGATAGAAGTCAAGACAGAGAGGAAGCAAAACAGAGA 120 || || | ||||||||||||| | |||| |||| || |||||||||||||||||||| Sbjct 889 AATGAACTTGATCCATTGACCATCCAGAGAAATCAATACCGAGAGGAAGCAAAACAGAGA 948 Query 121 TATTTTGAGAAGAAGAGCCGCCGCAAATTCATGAAG-CTACACCGATATGAAAGTCGATC 179 ||||||||||||||||| | ||||||||| ||||| | ||||||||||||||||||| | Sbjct 949 TATTTTGAGAAGAAGAGGAGTCGCAAATTCGTGAAGGC-ACACCGATATGAAAGTCGAGC 1007 Query 180 A-AACGCAGCTGTGAAGAAAAAACGAAGAAGAGGTAAATTTGTGAAAGAGGATGACGAAA 238 | || |||||| ||||||||||||||| ||||||| |||||||||| | ||||||||| Sbjct 1008 ACAAA-CAGCTGCGAAGAAAAAACGAAGCAGAGGTAGATTTGTGAAAAACGATGACGAAT 1066 Query 239 TCGGCAATGATCCCCCAGCT 258 ||| |||||| ||||||||| Sbjct 1067 TCGACAATGACCCCCCAGCT 1086 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12215063007 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5