BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887810

Length=1653
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20510.1 | Symbols:  | Transmembrane proteins 14C | chr3:716...   167    4e-40


> AT3G20510.1 | Symbols:  | Transmembrane proteins 14C | chr3:7160677-7162206 
FORWARD LENGTH=782
Length=782

 Score =  167 bits (90),  Expect = 4e-40
 Identities = 90/90 (100%), Gaps = 0/90 (0%)
 Strand=Plus/Plus

Query  1436  TCATCGCAGCTGCTCTCACACTAGTCATGGGACAGCGTTACTTGCTGACTGGAAAGATTA  1495
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  407   TCATCGCAGCTGCTCTCACACTAGTCATGGGACAGCGTTACTTGCTGACTGGAAAGATTA  466

Query  1496  TGCCGGCTGGTTTGGTTGCTGGGATCAGTG  1525
             ||||||||||||||||||||||||||||||
Sbjct  467   TGCCGGCTGGTTTGGTTGCTGGGATCAGTG  496



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 81676286715


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5