BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887811

Length=1083
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20555.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   156    5e-37


> AT3G20555.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: Protein of unknown function (DUF626) 
(TAIR:AT3G44770.2); Has 15 Blast hits to 15 proteins in 2 
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; 
Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI 
BLink). | chr3:7178200-7178614 REVERSE LENGTH=333
Length=333

 Score =  156 bits (84),  Expect = 5e-37
 Identities = 92/96 (96%), Gaps = 0/96 (0%)
 Strand=Plus/Plus

Query  907   ACCCGAGAAACTCATACTGACCCGTCTCTCAAGCTCGAGTCTATGAATGCTATCTTCCAC  966
             ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct  46    ACCCGAGAAACTCATACTGACCCGTCTCTAAAGCTCGAGTCTATGAATGCTGTCTTCCAC  105

Query  967   ATAAGCTTCAGGGCCAACAGTTGCGACTACACATCG  1002
             |||||||||| |||||||||||||||||||| ||||
Sbjct  106   ATAAGCTTCAAGGCCAACAGTTGCGACTACAAATCG  141



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 53061976065


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5