BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887823

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23530.1 | Symbols:  | Cyclopropane-fatty-acyl-phospholipid ...   531    3e-150
  AT3G23510.1 | Symbols:  | Cyclopropane-fatty-acyl-phospholipid ...   520    7e-147


> AT3G23530.1 | Symbols:  | Cyclopropane-fatty-acyl-phospholipid 
synthase | chr3:8436671-8442846 FORWARD LENGTH=3177
Length=3177

 Score =  531 bits (287),  Expect = 3e-150
 Identities = 313/326 (96%), Gaps = 0/326 (0%)
 Strand=Plus/Plus

Query  160  GTTACATATCCAAACATGATGGAGTTCTTCGAGAACCTTGGAGTAGACATGGAGGTTTCA  219
            ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  502  GTTACATATCCAAACATGATGGAGTTCTTCGAGAATCTTGGAGTAGAGATGGAGGTTTCA  561

Query  220  GACATGTCTTTCGCAGTGAGCCTTGACAATGGCAAAGGTTGTGAATGGGGAAGCCGCAAC  279
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  562  GACATGTCTTTCGCAGTGAGCCTTGACAATGGGAAAGGTTGTGAATGGGGAAGCCGCAAC  621

Query  280  GGTGTCTCGGGCTTATTTGCTCAGAAGAAGAACGTTTTAAATCCGTATTTCTGGCAAATG  339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  622  GGTGTCTCGGGCTTATTTGCTCAGAAGAAGAACGTTTTAAATCCGTATTTCTGGCAAATG  681

Query  340  ATCAGAGAAATTGTTAGATTTAAAGAAGAGGTTTTAAAATACATCGAGGAGCTTGAGGGT  399
            ||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct  682  ATCAGAGAAATTGTTAGATTTAAAGAAGACGTCTTAAAGTACATTGAGGAGCTTGAGGGT  741

Query  400  AACCCCGATATTGATCGAAAGGAAACCTTAGGAGAATTCCTCAATGCTCGCGGATACTCT  459
            |||||||||||||||||||||||||| ||||||||||| |||||| | || |||||||||
Sbjct  742  AACCCCGATATTGATCGAAAGGAAACATTAGGAGAATTTCTCAATTCACGTGGATACTCT  801

Query  460  GAGTTGTTTCAGAAAGCTTACTTGGT  485
            |||||||||||| |||||||||||||
Sbjct  802  GAGTTGTTTCAGCAAGCTTACTTGGT  827


 Score =  182 bits (98),  Expect = 4e-45
 Identities = 104/107 (97%), Gaps = 0/107 (0%)
 Strand=Plus/Plus

Query  55   AGTGGAATAAGTGGATTAGGGAGTGCTTACGTACTTGCAAATCAAGGAGTTAAAGAAGTT  114
            |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  346  AGTGGAATAAGTGGATTAGGAAGTGCTTACGTACTTGCGAATCAAGGAGTTAAAGAAGTT  405

Query  115  GTGTTGTACGAGAAAGAAGAGTCATTAGGAGGTCATGCTAAAACGGT  161
            ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  406  GTGTTATACGAGAAAGAAGAGTCATTAGGAGGTCATGCTAAAACGGT  452


 Score = 76.8 bits (41),  Expect = 2e-13
 Identities = 50/54 (93%), Gaps = 1/54 (2%)
 Strand=Plus/Plus

Query  1   ATGTGGCTTGGCTTATCTCCTCAGCACAAGTGTTTCCTCTTAAACTCATCCAAT  54
           ||||||||||||||||||||||||||||||||||||||||| | ||| || |||
Sbjct  2   ATGTGGCTTGGCTTATCTCCTCAGCACAAGTGTTTCCTCTTTA-CTCTTCAAAT  54


> AT3G23510.1 | Symbols:  | Cyclopropane-fatty-acyl-phospholipid 
synthase | chr3:8427660-8433314 FORWARD LENGTH=3062
Length=3062

 Score =  520 bits (281),  Expect = 7e-147
 Identities = 309/323 (96%), Gaps = 0/323 (0%)
 Strand=Plus/Plus

Query  160  GTTACATATCCAAACATGATGGAGTTCTTCGAGAACCTTGGAGTAGACATGGAGGTTTCA  219
            |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  481  GTTACATATCCAAACATGATAGAGTTCTTCGAGAACCTTGGAGTAGAGATGGAGGTTTCA  540

Query  220  GACATGTCTTTCGCAGTGAGCCTTGACAATGGCAAAGGTTGTGAATGGGGAAGCCGCAAC  279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  GACATGTCTTTCGCAGTGAGCCTTGACAATGGCAAAGGTTGTGAATGGGGAAGCCGCAAC  600

Query  280  GGTGTCTCGGGCTTATTTGCTCAGAAGAAGAACGTTTTAAATCCGTATTTCTGGCAAATG  339
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  601  GGTGTCTCGGGCTTATTTGCTCAAAAGAAGAACGTTTTAAATCCGTATTTCTGGCAAATG  660

Query  340  ATCAGAGAAATTGTTAGATTTAAAGAAGAGGTTTTAAAATACATCGAGGAGCTTGAGGGT  399
            ||||||||||||||||||||||||||||| || ||||| ||||| ||| |||||||||||
Sbjct  661  ATCAGAGAAATTGTTAGATTTAAAGAAGACGTCTTAAATTACATTGAGAAGCTTGAGGGT  720

Query  400  AACCCCGATATTGATCGAAAGGAAACCTTAGGAGAATTCCTCAATGCTCGCGGATACTCT  459
            ||||||||||| |||||||||||||||||||||||||| |||||| | || |||||||||
Sbjct  721  AACCCCGATATCGATCGAAAGGAAACCTTAGGAGAATTTCTCAATACACGTGGATACTCT  780

Query  460  GAGTTGTTTCAGAAAGCTTACTT  482
            |||||||||||| ||||||||||
Sbjct  781  GAGTTGTTTCAGCAAGCTTACTT  803


 Score =  165 bits (89),  Expect = 4e-40
 Identities = 101/107 (94%), Gaps = 0/107 (0%)
 Strand=Plus/Plus

Query  55   AGTGGAATAAGTGGATTAGGGAGTGCTTACGTACTTGCAAATCAAGGAGTTAAAGAAGTT  114
            ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  325  AGTGGTATAAGTGGATTAGGAAGTGCTTACGTACTTGCGAATCAAGGAGTTAAAGAAGTT  384

Query  115  GTGTTGTACGAGAAAGAAGAGTCATTAGGAGGTCATGCTAAAACGGT  161
            |||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct  385  GTGTTGTACGAGAAAGAAGAGTCATTAGGAGGCCATGCCAAGACGGT  431


 Score = 99.0 bits (53),  Expect = 4e-20
 Identities = 56/57 (98%), Gaps = 1/57 (2%)
 Strand=Plus/Plus

Query  1   ATGTGGCTTGGCTTATCTCCTCAGCACAAGTGTTTCCTCTTAAACTCATCCAATAGT  57
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  4   ATGTGGCTTGGCTTATCT-CTCAGCACAAGTGTTTCCTCTTAAACTCATCCAATAGT  59



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26021288146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5