BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887824

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23490.1 | Symbols: CYN | cyanase | chr3:8423011-8424652 REV...   747    0.0  


> AT3G23490.1 | Symbols: CYN | cyanase | chr3:8423011-8424652 REVERSE 
LENGTH=971
Length=971

 Score =  747 bits (404),  Expect = 0.0
 Identities = 463/492 (94%), Gaps = 1/492 (0%)
 Strand=Plus/Plus

Query  1    ATGGAAGCGGCGAAGAAACAGAGTGTTACAAATCAGCTTCTCGCCGTGAAAACAGCTTCC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  238  ATGGAAGCGGCGAAGAAACAGAGTGTTACAAATCAGCTTCTCGCCGTGAAATCAGCTTCC  297

Query  61   GGCAAGACTTTTAGCCAATTAGCGGCGGAGACTGGTCTCACCAACGTCTACGTAGCTCAG  120
            ||||||||||||||||| ||||| |||||||| ||||| |||||||| ||||||||||||
Sbjct  298  GGCAAGACTTTTAGCCAGTTAGCCGCGGAGACAGGTCTAACCAACGTATACGTAGCTCAG  357

Query  121  CTTCTCCGTCGCCAAGCTCAGCTCAAACCGGACACAGTCCCGAAGCTTAAGGAAGCTTTA  180
            ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  358  CTTCTCCGTCGTCAAGCTCAGCTCAAACCGGACACAGTCCCAAAGCTTAAGGAAGCTTTA  417

Query  181  CCGGCTCTGACTGATGAACTTATCGGAGATATGATGTCTCCGCCGTGGAGATCTTATGAT  240
            || |||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct  418  CCAGCTCTGACCGATGAACTAATCGGAGATATGATGTCTCCTCCGTGGAGATCCTATGAT  477

Query  241  CCTAATCTCATTCAAGAACCCACTATCTACAGGTTGAATGAAGCAGTGATGCATTTTGGT  300
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  478  CCTAATCTCATCCAAGAACCCACTATCTACAGGTTGAATGAAGCAGTGATGCATTTTGGT  537

Query  301  GAGAGTATAAAGGAGATTATCAATGAAGATTTTGGCGACGGCATCATGTCGGCGATAGAC  360
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| 
Sbjct  538  GAGAGTATAAAGGAGATTATCAATGAAGATTTTGGAGATGGCATCATGTCGGCGATAGAT  597

Query  361  TTCTATTGCTCTGTGGACAAAGTTAAAGGAGTGGATGGTAATAATCGTGTGGTCGTTACA  420
            |||||||||||||| |||||| | ||||||||||||||||| ||||| ||||| || || 
Sbjct  598  TTCTATTGCTCTGTCGACAAAATCAAAGGAGTGGATGGTAACAATCGCGTGGTTGTGACG  657

Query  421  CTTGATGGGAAGTATCTTTCGCATTTCGAACAGAGGACGGAGAATATGGTCTCAAGGCTA  480
            |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  658  CTTGATGGAAAGTATCTTTCGCATTCCGAACAGAGGACGGAGAATATGGTCTCAAGGCTA  717

Query  481  AC-CTCAAGGGA  491
            |  |||||||||
Sbjct  718  AATCTCAAGGGA  729



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26021288146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5