BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887827
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39060.1 | Symbols: SWEET9, AtSWEET9 | Nodulin MtN3 family p... 926 0.0
> AT2G39060.1 | Symbols: SWEET9, AtSWEET9 | Nodulin MtN3 family
protein | chr2:16306688-16308252 REVERSE LENGTH=953
Length=953
Score = 926 bits (501), Expect = 0.0
Identities = 534/550 (97%), Gaps = 2/550 (0%)
Strand=Plus/Plus
Query 1 TTTGGATGTTTCATTGAAATCTCCTACCTGTTTCTCTATATCATTTATGCACCAAGAGAG 60
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 275 TTTGGATGTTTCATTGAAATCTCCTACTTGTTTCTCTATATCCTTTATGCACCAAGAGAG 334
Query 61 GCCAAGATATCCACGTTGAAGTTGATAGTGATATGCAACATCGGTGGACTTGGTCTCTTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 GCCAAGATATCCACGTTGAAGTTGATAGTGATATGCAACATCGGTGGACTTGGTCTCTTA 394
Query 121 ATTCTTCTAGTCAATCTCTTGGTTCCAAAACAACACCGTGTCTCGACCGTTGGATGGGTT 180
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 395 ATTCTTCTAGTTAATCTTTTGGTTCCAAAACAACACCGCGTCTCGACCGTTGGATGGGTT 454
Query 181 TGTGCTGCTTACAGTCTCGCCGTCTTTGCTTCTCCCTTAAGCGTCATGAGGAAGGTTATA 240
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 455 TGTGCTGCCTACAGTCTCGCAGTCTTTGCTTCTCCCTTAAGCGTCATGAGGAAGGTTATA 514
Query 241 AAGACAAAAAGTGTGGAGTACATGCCGTTTCTTCTCTCCTTGTCTCTCACTCTTAACGCC 300
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 AAGACAAAGAGTGTGGAATACATGCCGTTTCTTCTCTCCTTGTCTCTCACTCTTAACGCC 574
Query 301 GTCATGTGGTTCTTTTATGGACTTCTTATCAAAGACAAGTTCATCGCTATGCCAAACATT 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 575 GTCATGTGGTTCTTTTATGGACTTCTTATCAAAGACAAGTTCATTGCTATGCCAAACATT 634
Query 361 CTCGGTTTTCTATTCGGTGTAGCTCAGATGATACTATACATGATGTATCAAGGTTCCACG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 CTCGGTTTTCTATTCGGTGTAGCTCAGATGATACTATACATGATGTATCAAGGTTCCACG 694
Query 421 AAAACGGATTTGCCAACAGAGAACCAACTTGCAAATAAAACCGATGTAAACGAAGTGCCG 480
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 695 AAAACGGATTTGCCAACAGAGAACCAACTAGCAAATAAAACCGATGTTAACGAAGTCCCG 754
Query 481 ATCGTGGCCGTTGAATTGCCTGATGTGAGATCAGACAATGTTGAAGGATCGGCT-AGGCC 539
||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||
Sbjct 755 ATCGTGGCCGTTGAATTGCCTGATGTGGGATCAGACAATGTTGAAGGATCGG-TGAGGCC 813
Query 540 AATGAAGTGA 549
||||||||||
Sbjct 814 AATGAAGTGA 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26322693028
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5