BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887835

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G15380.1 | Symbols:  | Plasma-membrane choline transporter f...   669    0.0  


> AT3G15380.1 | Symbols:  | Plasma-membrane choline transporter 
family protein | chr3:5193228-5196591 FORWARD LENGTH=2350
Length=2350

 Score =  669 bits (362),  Expect = 0.0
 Identities = 382/392 (97%), Gaps = 0/392 (0%)
 Strand=Plus/Plus

Query  48    GCCAGAGATACCGTTTCTTCCTGTTTTTGCCTCAATGAAGCGGCTTGCACGCTACAACCT  107
             ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct  1513  GCCAGAGATACCGTTTCTTCCTGTTTTCGCATCAATGAAGCGGCTTGCACGCTACAACCT  1572

Query  108   AGGATCTGTGGCTCTTGGTTCACTCATTGTCTCTTTTGTTGAGTCTGTTCGGTTCATTCT  167
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1573  AGGATCCGTGGCTCTTGGTTCACTCATTGTCTCTTTTGTTGAGTCTGTTCGGTTCATTCT  1632

Query  168   CGAAGCAATTCGTCGTAGAACAAAAGTAAGCGGGACCACACCTGATCACTGGTTTTGGAG  227
             ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct  1633  CGAAGCAATTCGTCGTAAAACAAAAGTAAGCGGGACCATACCTGATCACTGGTTTTGGAG  1692

Query  228   AATGGCTCATTACACTTCACGTGGTTGTCTCAAAAGCGTGGAGTGGACCATCAAATCGGT  287
             |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1693  AATGGCTCATTACACTTCACGTGGTTGTCTCAAAAGTGTGGAGTGGACCATCAAATCGGT  1752

Query  288   TAACCGTAATGCCTACATAATGATTGCTATAACAGGGAAAAGCTTCTGCAAATCGTCTGC  347
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1753  TAACCGTAATGCCTACATAATGATTGCTATAACAGGGAAAAGCTTCTGCAAATCGTCTGC  1812

Query  348   AATAGCGACAGAGCTGATCATAAGCAACATTCTGAGGATAGGGAAAGTTAATGTGATAGG  407
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1813  AATCGCGACAGAGCTGATCATAAGCAACATTCTGAGGATAGGGAAAGTTAATGTGATAGG  1872

Query  408   AGATGTAATACTGTTTCTAGGACAGCTTTGTG  439
             |||||| ||| ||||||||||| |||||||||
Sbjct  1873  AGATGTTATATTGTTTCTAGGAAAGCTTTGTG  1904


 Score =  318 bits (172),  Expect = 3e-86
 Identities = 189/197 (96%), Gaps = 1/197 (1%)
 Strand=Plus/Plus

Query  434   TTTGTGCATGTTGGGCATTGGGGTATATTGTGGCAACACTTTTCTTTCCGGTGCTTGAGA  493
             |||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  1999  TTTG-GCATGTTGGGCATTGGGGTATATTGTGGCAACACTTTTCTTTGCGGTGGTTGAGA  2057

Query  494   TGTCGATAGACACAATCATTCTCTCCTTCTGTCAAGACTCAGAGGAGAATCAAGGGAATG  553
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2058  TGTCGATAGACACCATCATTCTCTCCTTCTGTCAAGACTCAGAGGAGAATCAAGGGAATG  2117

Query  554   CTCAGCACGCGCCACCTCTTCTGCTTGAAACTTTAGATAGCAATCAAGAGGAAGAGGTTC  613
             |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  2118  CTCAGCACGCACCACCTCTTCTGCTTGAAACTTTAGATAGCAATCAGGAGGAAGAGGTTC  2177

Query  614   AGAGACTTACCCACTGA  630
             |||| ||||| ||||||
Sbjct  2178  AGAGTCTTACTCACTGA  2194



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30391658935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5