BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887837

Length=261
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55550.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   438    1e-122


> AT5G55550.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:22502064-22504011 REVERSE LENGTH=1640
Length=1640

 Score =  438 bits (237),  Expect = 1e-122
 Identities = 253/261 (97%), Gaps = 0/261 (0%)
 Strand=Plus/Plus

Query  1    ATGGAATCGGATCTGGGGAAGCTCTTCATTGGTGGGATTTCGTGGGATACAGATGAAGAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  187  ATGGAATCGGATCTGGGGAAGCTCTTCATTGGTGGGATTTCGTGGGATACAGACGAAGAA  246

Query  61   AGGTTAAGAGACTATTTTAGCAACTATGGTGATGTTGTTGAAGCTGTGATCATGAGAGAT  120
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  247  AGGTTAAGAGACTACTTTAGCAACTATGGTGATGTTGTTGAAGCTGTGATCATGAGAGAT  306

Query  121  CGTGCCACAGGACGTGCACGTGGCTTCGGCTTCATTGTCTTTGCAGATCCTTGTGTCTCA  180
            ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct  307  CGTGCCACAGGTCGTGCACGTGGCTTCGGCTTCATTGTCTTTGCAGACCCCTGTGTCTCA  366

Query  181  GAGAGAGTGATCATGGAGAAACACATCATCGATGGCCGCACGGTTGAGGCCAAGAAGGCC  240
            ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| 
Sbjct  367  GAGAGAGTGATCATGGATAAACACATCATCGATGGCCGCACGGTTGAGGCGAAGAAGGCT  426

Query  241  GTGCCTCGAGATGATCAGCAG  261
            |||||||||||||||||||||
Sbjct  427  GTGCCTCGAGATGATCAGCAG  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11913456513


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5