BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887838

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G26000.2 | Symbols: BRIZ2 | zinc finger (C3HC4-type RING fin...   307    2e-83
  AT2G27160.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  84.2    4e-16


> AT2G26000.2 | Symbols: BRIZ2 | zinc finger (C3HC4-type RING finger) 
family protein | chr2:11081302-11085350 FORWARD LENGTH=1746
Length=1746

 Score =  307 bits (166),  Expect = 2e-83
 Identities = 203/219 (93%), Gaps = 9/219 (4%)
 Strand=Plus/Plus

Query  1     GAGAAGAAGGCAGTTCGGGTAAAGGATGAAAAGATTGAGGGCTTAGAAGAACAGCTTGGA  60
             ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct  1324  GAGAAGAAGGCAGTTCGGGCAAAGGATGAAAAGATTCAGGGCTTAGAAGAACAGCTTGGA  1383

Query  61    AAACTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACGAAAGAGGTCCAGGAC  120
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1384  AACCTAATGGCCCAAATGGATGGTGAGAGTGAAGTCTCAGAGACGAAAGAGGTCCAGGAC  1443

Query  121   GCCACTGTCTTGCCCTTGCCGACCACCAGTAACTCTTCTTCTGCGTCAGGGAATGTTATA  180
             ||||||||||  |    |   ||||||| || ||||||||||| | ||||||||||||||
Sbjct  1444  GCCACTGTCT--C----G---ACCACCAATACCTCTTCTTCTGGGGCAGGGAATGTTATA  1494

Query  181   CATGCAAATAAAAAGAAGAGTAACAGAAGAAAGGGTTAG  219
             |||||||||||||||||||||||||||||||||||||||
Sbjct  1495  CATGCAAATAAAAAGAAGAGTAACAGAAGAAAGGGTTAG  1533


> AT2G27160.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; Has 2 Blast hits to 2 
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr2:11607432-11608416 REVERSE LENGTH=818
Length=818

 Score = 84.2 bits (45),  Expect = 4e-16
 Identities = 65/75 (87%), Gaps = 0/75 (0%)
 Strand=Plus/Plus

Query  145  ACCAGTAACTCTTCTTCTGCGTCAGGGAATGTTATACATGCAAATAAAAAGAAGAGTAAC  204
            |||| || |||||| |||| ||| | |||||  | || ||||||||||||||||||||||
Sbjct  728  ACCAATACCTCTTCCTCTGGGTCTGAGAATGCCACACGTGCAAATAAAAAGAAGAGTAAC  787

Query  205  AGAAGAAAGGGTTAG  219
            |||||||||||||||
Sbjct  788  AGAAGAAAGGGTTAG  802



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9802211055


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5