BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887841

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70900.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   460    2e-129


> AT1G70900.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G23110.4); 
Has 57 Blast hits to 57 proteins in 14 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26731813-26733875 
FORWARD LENGTH=1191
Length=1191

 Score =  460 bits (249),  Expect = 2e-129
 Identities = 259/264 (98%), Gaps = 0/264 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTGCATCAGCGTTGGCTCTACCGTTCCAGCCTCTCGTGGTATCAGCTGTTCACACT  60
            |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  690  ATGGCTGCATCAGCTTTGGCTCTACCGTTTCAGCCTCTCGTGGTATCAGCTGTTCACACT  749

Query  61   GGAATGATGGAGGTAGCATTTGCGAAACGAGCCTTAGAGGATCCAGATTTGAAAATGGCT  120
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  750  GGAATGATGGAGGTAGCATTTGCGAAACGAGCCTTAGAGGATCCGGATTTGAAAATGGCT  809

Query  121  CATGATGTACACAAGATGTCTTCGTTATTGGGCGGAGCATTGTTCATAGCTGATGATATT  180
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct  810  CATGATGTACACAAGATGTCTTCGTTATTAGGCGGAGCATTGTTCATAGCTGATGATCTT  869

Query  181  TTCCCTGAAACACCATTCATTCACGCCGGTTGGCATCTCGCCGCAGCCATTGGCGTTGGA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  870  TTCCCTGAAACACCATTCATTCACGCCGGTTGGCATCTCGCCGCAGCCATTGGCGTTGGA  929

Query  241  ACTTGCAATAAGCTTCTTCAGTAA  264
            ||||||||||||||||||||||||
Sbjct  930  ACTTGCAATAAGCTTCTTCAGTAA  953



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12064259760


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5