BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887843
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05790.1 | Symbols: LON4 | lon protease 4 | chr3:1720154-172... 715 0.0
AT3G05780.1 | Symbols: LON3 | lon protease 3 | chr3:1714941-171... 619 1e-176
> AT3G05790.1 | Symbols: LON4 | lon protease 4 | chr3:1720154-1725182
REVERSE LENGTH=2829
Length=2829
Score = 715 bits (387), Expect = 0.0
Identities = 447/476 (94%), Gaps = 3/476 (1%)
Strand=Plus/Plus
Query 532 AATTTTGATGTCCTACGGGCAGAAAAGATGCTTGACGAGGATCATTACAGATTATCTGAA 591
|||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1228 AATTTTAATGTCCTACGGGCAGAAAAGATTCTTGACGAGGATCATTACGGATTATCTGAT 1287
Query 592 GTAAAAGAAAGAATACTAGAGTTTATTGCTGTGGGAAGACTTAGAGGCACTTCA-AA--A 648
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1288 GTAAAAGAAAGAATACTAGAGTTTATTGCTGTGGGAGGACTTAGAGGCACTTCACAAGGG 1347
Query 649 AAGATCATACGTCTTTCTGGCCCACCTGGAGTAGGTAAAACTAGCATTGGGCGTTCAATT 708
|||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1348 AAGATCATTTGTCTCTCTGGCCCAACTGGAGTAGGTAAAACTAGCATTGGGCGTTCAATT 1407
Query 709 GCACGTGCTCTTGACTGCAAGTTCTTCCTGTTCTCTGTTGGAGGACTATTTGATGTTGCT 768
||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1408 GCACGTGCTCTTGACCGCAAGTTCTTCCGGTTCTCTGTTGGAGGACTATCCGATGTTGCT 1467
Query 769 GAAATTAAGGGGCACCGTCGAACATGTATTGGTGCCATGCCTGGAAAGATGGTGCAATGT 828
|| ||||||||||| |||||||| | |||||||||||||||||||||||||||||| |||
Sbjct 1468 GAGATTAAGGGGCATCGTCGAACGTATATTGGTGCCATGCCTGGAAAGATGGTGCAGTGT 1527
Query 829 CTAAAGAATGTGGGAACAGAAAATCCTCTTGTTCTGATCGATGAGATTGATAAGCTTGGA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 CTAAAGAATGTGGGAACAGAAAATCCTCTTGTTCTGATCGATGAGATTGATAAGCTTGGA 1587
Query 889 GTTAGGTGCCACGATGGTGACCCAGCCAGTGCAATGTTGGAGCTTTTGGATCCAGAGCAG 948
|||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 GTTAGGGGCCACCATGGCGACCCAGCCAGTGCAATGTTGGAGCTTTTGGATCCAGAGCAG 1647
Query 949 AATGCAAATTTTCTAGACCACTATCTCGACATTACTATTGGCTTATCCAAGGtttt 1004
||||||||||||||||||||||||||||| || |||||| |||||||||||||||
Sbjct 1648 AATGCAAATTTTCTAGACCACTATCTCGATGTTCCTATTGACTTATCCAAGGTTTT 1703
Score = 588 bits (318), Expect = 4e-167
Identities = 395/431 (92%), Gaps = 10/431 (2%)
Strand=Plus/Plus
Query 108 GGCATGTTCTCTTCATATCTGGCACTTCTTGCGACATATAGGTGAAATAAATTATCCAAG 167
|||||||||||||||||| ||||||| |||| |||||||||||||| | ||||||||||
Sbjct 723 GGCATGTTCTCTTCATATTTGGCACTGCTTGAGACATATAGGTGAATTCAATTATCCAAA 782
Query 168 GTTAGCCGACTCTGGAGCCGGGATCTCTGGCGCTAACAAACATCAAAATCAGGGtttttt 227
||||||||| | |||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 783 GTTAGCCGATTTTGGAGCTGGGATCTCTGGCGCTAACAAACATCAAAATCAGGGGGTTCT 842
Query 228 tGAAGAACTGGATGTTCATAAACGTC-AGGAGTTGACACTGGAATTGGTGAAAAAAGAAG 286
|||||||||||||||||| ||||||| || ||||||| ||||||||||||||||||||||
Sbjct 843 TGAAGAACTGGATGTTCACAAACGTCTAG-AGTTGACGCTGGAATTGGTGAAAAAAGAAG 901
Query 287 TTGAAATCAACAAGATTCAAGAATCCATAGCAAAAGTTGTTGAAGAAAAAATTAGTGGCG 346
||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 902 TTGAAATTAACAAGATTCAAGAATCCATAGCAAAAGCTGTTGAAGAAAAATTTAGTGGCG 961
Query 347 ACAGACGTCGTATCATACTAACGGAGCAGATCAATGCTATAAAAAAGGAGCTTGGCGTGG 406
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 962 ATAGACGTCGTATCATACTAAAGGAGCAGATCAATGCTATAAAAAAGGAGCTTGGCGGGG 1021
Query 407 AGACAGACGAG-AAATCTGCA-TGTTCT-AA--GTTTAGGGGAAGGATTGACCCTATTAA 461
|||||||| || ||||||||| | |||| || ||||||||| |||||||||||||||||
Sbjct 1022 AGACAGAC-AGCAAATCTGCACT-TTCTGAAAAGTTTAGGGGGAGGATTGACCCTATTAA 1079
Query 462 AGACAAGATTCCACAACATGTACTAAAAGTCGTAGAAGAAGAGCTTAAAAG-CTGCAGCT 520
||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1080 AGACAAGATTCCAGGACATGTACTAAAAGTCATAGAAGAAGAGCTTAAAAAACTGCAGCT 1139
Query 521 GTTTGAAACCA 531
||| |||||||
Sbjct 1140 GTTAGAAACCA 1150
Score = 161 bits (87), Expect = 1e-38
Identities = 99/105 (94%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 3 GAGTGAAGATCCTCTAACCGTCAAAGTTCACCATCTAAAGGATAAGCCATATGACAAAGA 62
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 561 GAGTGAAGATCCCCTAACCGTCAAAGTTGACCATCTAAAGGATAAGCCATATGACAAGGA 620
Query 63 CGATGATGTCATCAAAGCAACATACTTTCAAGTTATGTCAACACT 107
||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 621 CGATGATGTCATCAAGGCAACATACTTTCAAGTGATGTCGACACT 665
> AT3G05780.1 | Symbols: LON3 | lon protease 3 | chr3:1714941-1719608
REVERSE LENGTH=2775
Length=2775
Score = 619 bits (335), Expect = 1e-176
Identities = 432/478 (90%), Gaps = 10/478 (2%)
Strand=Plus/Plus
Query 532 AATTTTGATGTCCTACGGGCAGAAAAGATGCTTGACGAGGATCATTACAGATTATCTGAA 591
||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||
Sbjct 1201 AATTTTGATGTCCTACGGGCAAAAAAGATTCTTGACGAGGATCATTACGGATTATCTGAT 1260
Query 592 GTAAAAGAAAGAATACTAGAGTTTATTGCTGTGGGAAGACTTAGAGGCACTTCA-AA--A 648
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1261 GTAAAAGAAAGAATATTAGAGTTTATTGCTGTGGGAAGACTTAGAGGCACTTCACAAGGG 1320
Query 649 AAGATCATACGTCTTTCTGGCCCACCTGGAGTAGGTAAAACTAGCATTGGGCGTTCAATT 708
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AAGATCATTTGTCTCTCTGGCCCACCTGGAGTAGGTAAAACTAGCATTGGGCGTTCAATT 1380
Query 709 GCACGTGCTCTTGACTGCAAGTTCTTCCTGTTCTCTGTTGGAGGACTATTTGATGTTGCT 768
||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1381 GCACGTGCTCTTGACCGCAAGTTCTTCCGGTTCTCTGTTGGAGGACTATCCGATGTTGCT 1440
Query 769 GAAATTAAGGGGCACCGTCGAACATGTATTGGTGCCATGCCTGGAAAGATGGTGCAATGT 828
|| ||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 1441 GAGATTAAGGGGCATTGTCAAACATATGTTGGTGCCATGCCTGGAAAGATGGTGCAATGT 1500
Query 829 CTAAAGAATGTGGGAACAGAAAATCCTCTTGTTCTGATCGATGAGATTGATAAGCTTGGA 888
||||||| ||||||||||| |||||||||| || || |||| |||||||||||||||||
Sbjct 1501 CTAAAGAGTGTGGGAACAGCAAATCCTCTTATTTTGTTCGACGAGATTGATAAGCTTGG- 1559
Query 889 GTTAGGTGCCACGA-TGGTGACCCAGCCAGTGCAATGTTGGAGCTTTTGGATCCAGAGCA 947
| ||||||||| | ||| |||||||||||||| |||||||| || |||||||||||||
Sbjct 1560 -T-AGGTGCCAC-ACTGGCGACCCAGCCAGTGCGTTGTTGGAGGTTATGGATCCAGAGCA 1616
Query 948 GAATGCAAA-TTTTCTAGACCACTATCTCGACATTACTATTGGCTTATCCAAGGtttt 1004
||||||||| |||| ||||||||| |||| | ||||||||| |||||| ||||||||
Sbjct 1617 GAATGCAAAATTTT-TAGACCACTTTCTCAATGTTACTATTGACTTATCAAAGGTTTT 1673
Score = 231 bits (125), Expect = 8e-60
Identities = 260/322 (81%), Gaps = 22/322 (7%)
Strand=Plus/Plus
Query 1 GTGAGTGAAGATCCTCTAACCGTCAAAGTTCACCATCTAAAGGATAAGCCATATGACAAA 60
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 682 GTGAGTGAAGATCCTCTAACCGTCAGAGTTGACCATCTAAAGGATAAGCCATATGACAAG 741
Query 61 GACGATGATGTCATCAAAGCAA-CATACTTTCAAGTTATGTCAACAC-T--GGCA-TGTT 115
||| ||| ||||||||| |||| | ||| || ||||||| || || | | || | | ||
Sbjct 742 GACAATGCTGTCATCAAGGCAAGC-TACGTTGAAGTTATTTCGACTCTTAGGGAAGTCTT 800
Query 116 CTCTTCATATCTGGCACTTCT--TGCGA-C---ATATAGGTGAAATAAATTATCCAA-GG 168
|| || | ||| ||| | || | |||||||||| | | |||| |||
Sbjct 801 AAAGACAAAT-T--CAC-TCTGGAGAGATCAAGATATAGGTGACTTCAGTTAT-CAACAT 855
Query 169 TTAGCCGACTCTGGAGCCGGGATCTCTGGCGCTAACAAACATCAAAATCAGGGttttttt 228
||||| || | ||||||||||||||||||||||||||||||| |||||||||| || ||
Sbjct 856 TTAGCTGATTTTGGAGCCGGGATCTCTGGCGCTAACAAACATAAAAATCAGGGGGTTCTT 915
Query 229 GA-AGAACTGGATGTTCATAAACGTC-AGGAGTTGACACTGGAATTGGTGAAAAAAGAAG 286
| ||||||||||||||||||||||| || ||||||| ||||||||||||||||| |||
Sbjct 916 -ACAGAACTGGATGTTCATAAACGTCTAG-AGTTGACGTTGGAATTGGTGAAAAAACAAG 973
Query 287 TTGAAATCAACAAGATTCAAGA 308
| ||||| ||||||||| ||||
Sbjct 974 TAGAAATTAACAAGATTAAAGA 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51640703116
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5