BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887847

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22090.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   117    4e-26


> AT3G22090.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G71470.2); 
Has 12 Blast hits to 12 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7782912-7783561 
FORWARD LENGTH=542
Length=542

 Score =  117 bits (63),  Expect = 4e-26
 Identities = 88/100 (88%), Gaps = 2/100 (2%)
 Strand=Plus/Plus

Query  67   GAGTTGGTGGAAATTAGTGTTGCTCAAGGTGTGATTTC-GGGGAAGGATGCTTTTGAGAG  125
            ||||| ||||| |||| ||| ||||||||| ||||||| |  ||| | ||||||||||||
Sbjct  252  GAGTTAGTGGAGATTATTGTAGCTCAAGGTTTGATTTCTGAAGAA-GTTGCTTTTGAGAG  310

Query  126  AGTCAAGCTTATTGGTGATGACAAGGCTAAAGAGTTGAAT  165
            ||||||||||||||||||||| || |||||||||||||||
Sbjct  311  AGTCAAGCTTATTGGTGATGATAAAGCTAAAGAGTTGAAT  350



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8048216160


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5