BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887873
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59150.1 | Symbols: ATRABA2D, ATRAB-A2D, RABA2D | RAB GTPase... 776 0.0
AT1G47595.1 | Symbols: | pseudogene, similar to Ras-related pr... 418 3e-116
AT2G04120.1 | Symbols: | pseudogene, RAS-related GTP binding p... 377 4e-104
AT4G08190.1 | Symbols: | P-loop containing nucleoside triphosp... 244 5e-64
> AT5G59150.1 | Symbols: ATRABA2D, ATRAB-A2D, RABA2D | RAB GTPase
homolog A2D | chr5:23876586-23878429 FORWARD LENGTH=1020
Length=1020
Score = 776 bits (420), Expect = 0.0
Identities = 467/490 (95%), Gaps = 2/490 (0%)
Strand=Plus/Plus
Query 16 GTTGAAGGAAAGACTGTTAAAGCCCAGATCTGGGACACTGCAGGGCAAGAGCGGTACAGA 75
|||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 347 GTTGAAGGAAAGACTGTTAAGGCCCAGATATGGGACACTGCAGGTCAAGAGCGGTACAGA 406
Query 76 GCTATCACAAGCGCTTACTACAGAGGCGCGGTAGGTGCGCTTCTTGTCTATGACATTACC 135
||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 407 GCTATCACAAGTGCTTATTACAGAGGAGCGGTAGGTGCACTTCTTGTCTATGACATCACT 466
Query 136 AAAAGACAAACCTTTGACAATG-TCTTAAGGTGGCTACGTGAACTAAGAGACCATGCAGA 194
|||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||
Sbjct 467 AAAAGACAAACCTTTGACAATGTTC-TGAGGTGGCTACGTGAACTAAGAGACCATGCGGA 525
Query 195 TTCCAACATAGTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGATCAGT 254
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TTCCAACATTGTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGATCAGT 585
Query 255 TGCTGAGGAAGATGGACAGACTCTAGCTGAGACAGAAGGTCTCTCTTTCTTGGAGACATC 314
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 TGCGGAGGAAGATGGACAGACTCTAGCTGAGACAGAAGGTCTCTCTTTCTTGGAGACATC 645
Query 315 TGCTCTTGAAGCCACCAATGTTGAAAAAGCATTTCAAACTGTGTTAGCAGAGATTTACCA 374
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 646 AGCTCTTGAAGCCACCAATGTGGAGAAAGCATTTCAAACCGTGTTAGCAGAGATTTACCA 705
Query 375 CATCATCAGCAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCCGCGATTCC 434
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 706 CATCATCAGCAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCTGCCATTCC 765
Query 435 GGGGCAAGGAACAACGATTAACGTTGGTGACACATCTGGAGCTGGCAAAAGAGGTTGCTG 494
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 766 GGGGCAAGGAACAACGATTAACGTTGAAGACACATCTGGAGCTGGCAAAAGAGGTTGCTG 825
Query 495 CTCTACTTAA 504
||||||||||
Sbjct 826 CTCTACTTAA 835
> AT1G47595.1 | Symbols: | pseudogene, similar to Ras-related
protein Rab11C., blastp match of 77% identity and 2.3e-33 P-value
to SP|Q40193|R11C_LOTJA Ras-related protein Rab11C. {Lotus
japonicus} | chr1:17489055-17489450 REVERSE LENGTH=396
Length=396
Score = 418 bits (226), Expect = 3e-116
Identities = 272/295 (92%), Gaps = 0/295 (0%)
Strand=Plus/Plus
Query 104 CGGTAGGTGCGCTTCTTGTCTATGACATTACCAAAAGACAAACCTTTGACAATGTCTTAA 163
|||| || || ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2 CGGTGGGAGCACTTCTTGTCTATGACATCACCAAAAGACAGACCTTTGACAATGTCTTAA 61
Query 164 GGTGGCTACGTGAACTAAGAGACCATGCAGATTCCAACATAGTGATCATGATGGCTGGGA 223
|||||||||||||||||||||||||| | ||||||||||| ||||||||||| || |||
Sbjct 62 GGTGGCTACGTGAACTAAGAGACCATACGGATTCCAACATTGTGATCATGATAACTAGGA 121
Query 224 ACAAAGCTGATCTAAACCACTTGAGATCAGTTGCTGAGGAAGATGGACAGACTCTAGCTG 283
|||||||| ||||||||||||||| |||||| |||||||||||||| || |||| |||||
Sbjct 122 ACAAAGCTAATCTAAACCACTTGAAATCAGTAGCTGAGGAAGATGGTCACACTCCAGCTG 181
Query 284 AGACAGAAGGTCTCTCTTTCTTGGAGACATCTGCTCTTGAAGCCACCAATGTTGAAAAAG 343
||||||||||||||||| ||||||| || ||||||||||||||||| ||||| || ||||
Sbjct 182 AGACAGAAGGTCTCTCTATCTTGGAAACTTCTGCTCTTGAAGCCACAAATGTCGAGAAAG 241
Query 344 CATTTCAAACTGTGTTAGCAGAGATTTACCACATCATCAGCAAAAAAGCTTTGGC 398
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CATTTCAAACTGTGTTAGCAGAGATTTACCACATCATCAGCAAAAAAGCTTTGGC 296
> AT2G04120.1 | Symbols: | pseudogene, RAS-related GTP binding
protein, blastp match of 80% identity and 5.7e-32 P-value
to SP|Q39434|RAB2_BETVU Ras-related protein Rab2BV. (Sugar beet)
{Beta vulgaris} | chr2:1388194-1388947 FORWARD LENGTH=754
Length=754
Score = 377 bits (204), Expect = 4e-104
Identities = 238/255 (93%), Gaps = 0/255 (0%)
Strand=Plus/Plus
Query 115 CTTCTTGTCTATGACATTACCAAAAGACAAACCTTTGACAATGTCTTAAGGTGGCTACGT 174
||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||
Sbjct 318 CTTCTTGTCTATGACATCACCAAAAGACAGACTTTTGATAATGTCTTAAGGTGGCTACGT 377
Query 175 GAACTAAGAGACCATGCAGATTCCAACATAGTGATCATGATGGCTGGGAACAAAGCTGAT 234
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 378 GAACTAAGAGACCATGCGGATTCCAACATTGTGATCATGATGGCTGGGAACAAAGCTGAT 437
Query 235 CTAAACCACTTGAGATCAGTTGCTGAGGAAGATGGACAGACTCTAGCTGAGACAGAAGGT 294
|||||||||||||||||||| |||||||||||||| |||| ||||||| |||||||| ||
Sbjct 438 CTAAACCACTTGAGATCAGTAGCTGAGGAAGATGGTCAGATTCTAGCTAAGACAGAAAGT 497
Query 295 CTCTCTTTCTTGGAGACATCTGCTCTTGAAGCCACCAATGTTGAAAAAGCATTTCAAACT 354
|||||||||||||| |||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 498 CTCTCTTTCTTGGAAACATCTGCTCTTGAAGCCACCAATGTCGAGAAAGCATTTTAAACT 557
Query 355 GTGTTAGCAGAGATT 369
|| |||||| |||||
Sbjct 558 GTTTTAGCAAAGATT 572
> AT4G08190.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:5174523-5175476
REVERSE LENGTH=384
Length=384
Score = 244 bits (132), Expect = 5e-64
Identities = 169/185 (91%), Gaps = 9/185 (5%)
Strand=Plus/Plus
Query 164 GGTGGCTACGTGAACTAAGAGACCATGCAGATTCCAACATAGTGATCATGATGGCTGGGA 223
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 206 GGTGGCTACGTGAACTAAGAGACCATGCAGATTCCAACATTGTGATCATGATGGCTGGGA 265
Query 224 ACAAAGCTGATCTAAACCACTTGAGATCAGTTGCTGAGGAAGATGGACAGACTCTAGCTG 283
||||||||||||||||||||||||||||||| |||||||||||||| || | |
Sbjct 266 ACAAAGCTGATCTAAACCACTTGAGATCAGTAGCTGAGGAAGATGGTCA---T--A---- 316
Query 284 AGACAGAAGGTCTCTCTTTCTTGGAGACATCTGCTCTTGAAGCCACCAATGTTGAAAAAG 343
|||||||| |||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct 317 AGACAGAAAGTCTCTCTTTCTTGGAAACATCTGCTCTTGAAGCCACCAATGTCGAGAAAG 376
Query 344 CATTT 348
|||||
Sbjct 377 CATTT 381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24062156413
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5