BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887874
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59160.1 | Symbols: TOPP2, PPO | type one serine/threonine p... 1029 0.0
AT3G46820.1 | Symbols: TOPP5 | type one serine/threonine protei... 702 0.0
> AT5G59160.1 | Symbols: TOPP2, PPO | type one serine/threonine
protein phosphatase 2 | chr5:23879349-23881688 FORWARD LENGTH=1468
Length=1468
Score = 1029 bits (557), Expect = 0.0
Identities = 596/615 (97%), Gaps = 1/615 (0%)
Strand=Plus/Plus
Query 266 ACTATTTGTCTTCTGCTTGC-TACAAAATCAAATACCCCGAGAACTTTTTTCTTCTTAGA 324
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 543 ACTATTTGTCTTCTGCTTGCTTACAAAATCAAATACCCTGAGAACTTTTTTCTTCTAAGA 602
Query 325 GGAAACCACGAATGTGCTTCTATTAACAGAATCTATGGATTCTATGATGAATGTAAACGT 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GGAAACCACGAATGTGCTTCTATTAACAGAATCTATGGATTCTATGATGAATGTAAACGT 662
Query 385 CGATTCAGTGTGAGACTCTGGAAAGTGTTTACAGATTCTTTTAACTGTCTCCCCGTCGCT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 663 CGATTCAGTGTGAGACTCTGGAAAGTGTTTACAGATTCTTTTAACTGTCTCCCTGTTGCT 722
Query 445 GCTGTTATAGATGATAAGATATTATGTATGCACGGTGGGCTTTCTCCCGATTTGACCAAT 504
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 723 GCTGTTATAGACGATAAGATATTATGTATGCACGGTGGCCTTTCTCCCGATTTGACCAAC 782
Query 505 GTGGAAGAGATTAAGAACATTAAGCGACCTACCGATGTTCCAGACTCTGGTTTGCTCTGT 564
|||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 783 GTGGAACAGATTAAGAACATTAAGCGACCTACTGATGTTCCTGACTCTGGTTTGCTCTGT 842
Query 565 GATCTGCTTTGGTCTGATCCAAGCAAAGATGTCAAAGGTTGGGGGATGAATGATCGTGGA 624
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 843 GATCTGCTTTGGTCTGATCCAAGCAAAGATGTCAAAGGTTGGGGGATGAATGACCGTGGA 902
Query 625 GTCTCTTACACGTTTGGGCCTGACAAAGTCGCCGAATTTCTAATAAAGAATGATATGGAC 684
||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 903 GTCTCTTACACGTTTGGCCCTGACAAAGTCGCGGAGTTTCTAATAAAGAATGATATGGAT 962
Query 685 CTCATCTGCCGTGCCCACCAGGTTGTAGAGGATGGGTATGAGTTTTTCGCCGATAGACAG 744
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 963 CTCATCTGCCGTGCCCACCAGGTTGTAGAGGATGGATATGAGTTTTTCGCCGATAGACAG 1022
Query 745 CTTGTTACGATATTTTCTGCTCCCAACTACTGCGGTGAATTTGACAATGCTGGTGCTATG 804
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1023 CTTGTTACGATATTTTCTGCTCCCAACTACTGTGGTGAATTTGACAATGCTGGTGCTATG 1082
Query 805 ATGAGTGTTGATGAAAGTTTAATGTGCTCTTTCCAAATTCTTAAGCCTGCTGATCGAAGG 864
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1083 ATGAGTGTTGATGAAAGTTTAATGTGCTCTTTCCAAATTCTTAAGCCTGCTGATCGAAAG 1142
Query 865 CCCCGGTTCTTATGA 879
|||||||||||||||
Sbjct 1143 CCCCGGTTCTTATGA 1157
Score = 337 bits (182), Expect = 1e-91
Identities = 198/206 (96%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 1 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCCGTTCTCGATGATATCATTCGTCGT 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 219 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCCGCTCTCGATGATATCATTCGTCGT 278
Query 61 TTGTTGGATTACAGAAACCCTAAGCCTGGTACGAAGCAGGTTATGCTCACCGAGTCTGAG 120
|||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||
Sbjct 279 TTGTTGGATTACAGAAACCCTAAGCCTGGTACCAAACAGGCTATGCTCAACGAGTCTGAG 338
Query 121 ATCCGACAGCTTTGCATCGTCTCTAGAGAGATTTTCCTTCAACAGCCTAACCTCCTTGAG 180
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 339 ATCCGTCAGCTTTGCATCGTCTCTAGAGAGATTTTTCTTCAACAGCCTAACCTTCTTGAG 398
Query 181 CTCGAAGCTCCTATCAAGATCTGCGG 206
||||||||||||||||||||||||||
Sbjct 399 CTCGAAGCTCCTATCAAGATCTGCGG 424
> AT3G46820.1 | Symbols: TOPP5 | type one serine/threonine protein
phosphatase 5 | chr3:17241781-17244277 REVERSE LENGTH=1583
Length=1583
Score = 702 bits (380), Expect = 0.0
Identities = 546/624 (88%), Gaps = 19/624 (3%)
Strand=Plus/Plus
Query 266 ACTATTTGTCTTCTGCTTGC-TACAAAATCAAATACCCCGAGAACTTTTTTCTTCTT-AG 323
|||||||||||||||||||| ||||| ||||||||||| || |||||||||| |||| ||
Sbjct 610 ACTATTTGTCTTCTGCTTGCTTACAAGATCAAATACCCTGAAAACTTTTTTC-TCTTAAG 668
Query 324 AGGAAACCACGAATGTGCTTCTATTAACAGAATCTATGGATTCTATGATGAATGTAAACG 383
||||||||| || ||||| |||||||||||||| || ||||||||||| |||||||||||
Sbjct 669 AGGAAACCATGAGTGTGCATCTATTAACAGAATTTACGGATTCTATGACGAATGTAAACG 728
Query 384 TCGATTCAGTGTG-AGACTCTGGAAAGTGTTTACAGATTCTTTTAACTGTCTCCCCGTCG 442
|||||| ||| || ||||||||||||||||| ||| |||||||||||||||| || |
Sbjct 729 AAGATTCAACGTGAAG-CTCTGGAAAGTGTTTACCGATACTTTTAACTGTCTCCCTGTGG 787
Query 443 CTGCTGTTATAGATGATAAGATA-TTATGTATGCACGGTGGGCTTTCTCCCGATTTGACC 501
||||||| |||||||| |||||| || |||||||| ||||| || ||||| || |||| |
Sbjct 788 CTGCTGTCATAGATGAAAAGATACTT-TGTATGCATGGTGGACTATCTCCTGAGTTGATC 846
Query 502 AATGTGGAAGAGATTAAGAACATTA-AGCGACCTACCGATGTTCCAGACTCTGGTTTGCT 560
||||||||| | |||||||||| || |||| || || |||||||||||| ||||||||||
Sbjct 847 AATGTGGAACAAATTAAGAACA-TAGAGCGTCCAACTGATGTTCCAGACGCTGGTTTGCT 905
Query 561 CTGTGATCTGCTTTGGTCTGATCCAAGCAAAGATGTCAAAGGTTGGGGGATGAATGATCG 620
|||||| || |||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 906 CTGTGACCTTCTTTGGTCTGATCCTAGTAAAGATGTCAAAGGCTGGGGGATGAATGATCG 965
Query 621 TGGAGTCTCTTACACGTTTGG-GCCTGACAAAGTCGCCGAATTTCTAATAAAGAATGATA 679
||| ||||| ||||| ||||| | |||||||||| || || ||| |||||||||||||||
Sbjct 966 TGGTGTCTCCTACACTTTTGGTG-CTGACAAAGTTGCTGAGTTTTTAATAAAGAATGATA 1024
Query 680 TGGACCTCA-TCTGCCGTGCCCACCAGGTTGTAGAGGATGGGTATGAGTT-TTTCGCCGA 737
|||| | | |||| ||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 1025 TGGA-TTTAGTCTGTCGTGCCCACCAGGTTGTAGAGGATGGGTATGAGTTCTTT-GCTGA 1082
Query 738 TAGACAGCTTGTTACGATATTTTCTGCTCCCAACTACTGCGGTGAATTTGACAATGCTGG 797
|||||||||||| || || ||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 1083 TAGACAGCTTGTGACTATGTTTTCTGCTCCAAACTACTGTGGTGAATTTGACAATGCGGG 1142
Query 798 TGCTA-TGATGAGTGTTGATGAAAGTTTAATGTGCTCTTTCCAAATTCTTAAGCCTGCTG 856
||| | |||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1143 TGC-ATTGATGAGTGTCGACGAAAGTTTAATGTGCTCTTTCCAAATTCTTAAGCCTG-TG 1200
Query 857 -ATCGAAGGCCCCGGTTCTTATGA 879
|||| ||| | |||||||| |||
Sbjct 1201 GATCGGAGGTCGCGGTTCTTTTGA 1224
Score = 220 bits (119), Expect = 1e-56
Identities = 180/209 (86%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 1 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCCGTTCTCGATGATATCATTCGTCGT 60
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 286 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCTGTTCTCGACGACATCATTCGTCGT 345
Query 61 TTG-TTGGATTACAGAAACCCTAA-GCCTGGTACGAAGCAGGTTATGCTCACCGAGTCTG 118
|| ||| ||||| |||||||||| || ||| || || || | |||||||| ||| ||||
Sbjct 346 TTACTTG-ATTACCGAAACCCTAAAGC-TGGGACCAAACAAGCTATGCTCAACGATTCTG 403
Query 119 AGATCCGACAGCTTTGCATCGTCTCTAGAGAGAT-TTTCCTTCAACAGCCTAACCTCCTT 177
||||||||||||||||| | |||||||||||||| |||| ||||||||||| || |||
Sbjct 404 AGATCCGACAGCTTTGCTTTGTCTCTAGAGAGATATTTC-TTCAACAGCCTTGTCTTCTT 462
Query 178 GAGCTCGAAGCTCCTATCAAGATCTGCGG 206
||||||| || ||| | |||||||||||
Sbjct 463 GAGCTCGCTGCCCCTGTTAAGATCTGCGG 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5