BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887888
Length=219
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48820.2 | Symbols: ICK6 | inhibitor/interactor with cyclin-... 333 4e-91
> AT5G48820.2 | Symbols: ICK6 | inhibitor/interactor with cyclin-dependent
kinase | chr5:19792270-19794408 REVERSE LENGTH=1123
Length=1123
Score = 333 bits (180), Expect = 4e-91
Identities = 206/219 (94%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 1 ATGGTTACACCAGGGTCTAGCACAAGGTCGATGCGCAGAGCAACCAAAGAGTACACAAGG 60
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 567 ATGGTTACACCAGGGTCTAGCACGAGGTCGATGTGCAGAGCAACCAAAGAGTACACAAGG 626
Query 61 GACCAAGATAGCGTGATCCCGACCACTAGTGAGTTGGAGGAGTTTTTTGCCTATGCAGAG 120
|| ||||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||
Sbjct 627 GAACAAGATAACGTGATCCCGACCACTAGTGAAATGGAGGAGTTCTTTGCATATGCAGAG 686
Query 121 CAGCAACAACAGAGGCTATTCATGGAGAAGTACAACTTCGACATTGTGAATGAAATCCCC 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 687 CAGCAGCAACAGAGGCTATTCATGGAGAAGTACAACTTCGACATTGTGAATGATATCCCC 746
Query 181 CTCAGCGGACGATACGAATGGGTACAAGTCAATCCATGA 219
||||||||||| ||||||||||| |||||||| ||||||
Sbjct 747 CTCAGCGGACGTTACGAATGGGTGCAAGTCAAACCATGA 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9802211055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5