BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887896

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16810.1 | Symbols: APUM24, PUM24 | pumilio 24 | chr3:572324...   769    0.0  


> AT3G16810.1 | Symbols: APUM24, PUM24 | pumilio 24 | chr3:5723249-5727620 
REVERSE LENGTH=2194
Length=2194

 Score =  769 bits (416),  Expect = 0.0
 Identities = 510/554 (92%), Gaps = 12/554 (2%)
 Strand=Plus/Plus

Query  48   ATTCGATTCTCTAAAATCGAAGAAGCCAAAGCTGGTGTCTGGAGAACAACAACAAC----  103
            |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
Sbjct  147  ATTCGATTCTCTAAAATCAAAGAAGCCAAAGCTAGTGTCTGGAGAACAACAACAACATGT  206

Query  104  --AA-C---A--TGGGAAACCCAAATATTTTGGAGACAGGGAGCAGAGTACTAATCTATC  155
              || |   |  ||| |||||||||| |   || || | |||||||||||||||||||||
Sbjct  207  GAAACCTAAATTTGGTAAACCCAAATCTGCAGGTGATAAGGAGCAGAGTACTAATCTATC  266

Query  156  GAAGAAGGAGCGTCGTGTACAGGCTAAGGAGCTAACAGAAGCTAGGAAGAAGAAGAGGAA  215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  267  GAAGAAGGAGCGTCGTGTACAGGCTAAGGAGCTAACAGAAGCTAGGAAGAAGAAGAGAAA  326

Query  216  GCCACATTACAATCTTGAGCAAGAGCTTGCATCTCTATGGGAGAAGATGAGGCGTCGTGA  275
            ||| ||||||||||||||||||||||||| ||||||||||||||||||||| || ||| |
Sbjct  327  GCCTCATTACAATCTTGAGCAAGAGCTTGTATCTCTATGGGAGAAGATGAGACGCCGTAA  386

Query  276  TATTGGCAAGGAGGACCGATCAAAGCTGATTTCTGAAGCTATAAGGAAGATGAAGGGGAA  335
            ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  387  TATCGGCAAGGAGGATCGATCAAAGCTGATTTCTGAAGCTATAAGGAAGATGAAGGGGAA  446

Query  336  GGTTCCAGAGATTGCAGTCTCACATGTTTCATCCCGTGTACTCCAGACTTGTGTGAAGTT  395
            ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct  447  GGTTCCAGAGATTGCAGTCTCACATGTTTCATCTCGTGTACTTCAGACTTGTGTGAAGTT  506

Query  396  TTGCTCACAAGCTGAAAAAGATGCTCTCTTCGCCGAACTCCAGCCACAGTTTCTTAACCT  455
            ||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct  507  TTGCTCACAAGCTGAGAAAGATGTTCTCTTCACGGAACTCCAGCCACAGTTTCTTAACCT  566

Query  456  TGCTTCTAATAAATATGCTGTTCATTTTATACAGAAGATGTTGGATGGAGCATCTAAGCA  515
            ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  567  TGCTTCTAACAAATATGCTGTTCACTTTATACAGAAGATGTTGGATGGAGCATCTAAGCA  626

Query  516  GCAGCTGGCAGCTTGTATATTCAGCCTCCGGGGACATGTTGCTCCTCTTCTCCGTCACCT  575
            |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||  |
Sbjct  627  GCAGCTGGCAGCTTGTATATCCAGCCTCAGGGGACATGTTGCTCCTCTTCTCCGTCATGT  686

Query  576  GTTTGGATCTGTTG  589
            ||| |||||| |||
Sbjct  687  GTTCGGATCTCTTG  700



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28733932084


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5