BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887901

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G44740.1 | Symbols: CYCP4;1 | cyclin p4;1 | chr2:18441989-18...   538    1e-152


> AT2G44740.1 | Symbols: CYCP4;1 | cyclin p4;1 | chr2:18441989-18443399 
REVERSE LENGTH=1002
Length=1002

 Score =  538 bits (291),  Expect = 1e-152
 Identities = 323/339 (95%), Gaps = 0/339 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGGAGCTTGAGAACCCAAGTGTAATGTCGAAGCTAATAGCATTCTTATCTTCATTG  60
            |||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct  96   ATGGCGGAACTTGAGAATCCAAGTGTAATGTCGAAGCTGATAGCATTCTTATCTTCATTG  155

Query  61   CTAGAGCGAGTTGCTGAGTCAAACGATCTGACCAGGCGAGTCACGACTCAGTCACAGAGA  120
            ||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct  156  CTAGAGCGAGTTGCTGAGTCAAACGATCTGACCCGACGAGTCGCGACTCAGTCACAGAGA  215

Query  121  GTTTCGGTGTTCCATGGATTGAGTCGACCAACCATAACGATTCAGAGCTATCTACAGAGG  180
            ||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |||||
Sbjct  216  GTTTCGGTGTTTCATGGACTGAGTCGACCAACGATAACGATTCAGAGCTATCTAGAGAGG  275

Query  181  ATCTTCAAATACGCAAATTGTAGTCCTTCTTGCTTCGTCGTGGCTTACGTTTATCTCGAC  240
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  276  ATCTTCAAATACGCAAATTGTAGTCCTTCTTGCTTCGTCGTTGCTTACGTTTATCTCGAT  335

Query  241  CGTTTCACTCACAGACAACCTTCACTTCCCATCAAGTCCTTTAATGTCCATCGTCTTCTC  300
            ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  336  CGTTTCACTCACAGACAACCTTCACTTCCCATCAATTCCTTTAACGTCCATCGTCTTCTC  395

Query  301  ATCACCAGTGTTATGGTCGCTGCTAAATTCCTCGATGAT  339
            ||||| ||||| |||||||||||||||||||||||||||
Sbjct  396  ATCACTAGTGTCATGGTCGCTGCTAAATTCCTCGATGAT  434



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834340935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5