BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887906
Length=204
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28940.1 | Symbols: | AIG2-like (avirulence induced gene) f... 169 1e-41
AT3G28930.1 | Symbols: AIG2 | AIG2-like (avirulence induced gen... 104 3e-22
> AT3G28940.1 | Symbols: | AIG2-like (avirulence induced gene)
family protein | chr3:10968100-10969387 REVERSE LENGTH=810
Length=810
Score = 169 bits (91), Expect = 1e-41
Identities = 107/115 (93%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 78 TAGACTCAAAGGACGTTTGCATCCATGTATTTCTCCTTCTGAGAATGGAGTAATCAACGG 137
|||||||||||| || || ||| ||||||| |||||||||||||||||| ||||||||||
Sbjct 211 TAGACTCAAAGGTCGCTTACATGCATGTATCTCTCCTTCTGAGAATGGACTAATCAACGG 270
Query 138 CAAGATACTAACTGGATTAACAGATGCTCAGTTAGAGAATTTAGATATGATTGAA 192
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 271 CAAGATACTAACTGGGTTAACAGATTCTCAGTTAGAGAATTTAGATATGATTGAA 325
> AT3G28930.1 | Symbols: AIG2 | AIG2-like (avirulence induced gene)
family protein | chr3:10959686-10960808 REVERSE LENGTH=797
Length=797
Score = 104 bits (56), Expect = 3e-22
Identities = 64/68 (94%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 1 ATGACTAGCTCTGATCAATCTCCGTCGCACAACGTCTTCGTCTACGGCAGTTTCCAAGAA 60
||||| ||||| ||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 81 ATGACAAGCTCCGATCAATCTCCATCGCACGACGTCTTCGTCTACGGCAGTTTCCAAGAA 140
Query 61 CCAGCCGT 68
||||||||
Sbjct 141 CCAGCCGT 148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9104544531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5