BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887912
Length=279
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03340.1 | Symbols: UNE6 | LUC7 related protein | chr3:78632... 412 6e-115
> AT3G03340.1 | Symbols: UNE6 | LUC7 related protein | chr3:786320-790077
FORWARD LENGTH=1643
Length=1643
Score = 412 bits (223), Expect = 6e-115
Identities = 263/282 (93%), Gaps = 4/282 (1%)
Strand=Plus/Plus
Query 1 GATGAGAAGGCCAATTTACGCAATGAAAGATCTAAGGAACGGAACAGTAAGGAGAGGGAA 60
||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1047 GATGAGAAGGCCAATATACGCAAGGAAAGATCAAAGGAACGGAACAGTAAGGAGAGAGAA 1106
Query 61 TCAAGTAAAGACCGAGAGAAAGAGCGAGGATCTAGTCATGAACGTCGAAGAGATTATGAT 120
||||||||||||||||||||||| | || | |||||| ||||| ||||||||||||||||
Sbjct 1107 TCAAGTAAAGACCGAGAGAAAGAACAAGAAACTAGTCGTGAACATCGAAGAGATTATGAT 1166
Query 121 CGCAGGAGTAGAGATCGAGATAGGCACCATGACCGTGATCGTGAACAAGACA-AGGACTA 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1167 CGCAGGAGTAGAGATCGAGATAGGCACCATGACCGTGATCGTGAACAAGACAGAG-ACTA 1225
Query 180 TGATCGGTCAAACTCAAGAAGCAGACGTAGGTCACGCTCACGGTCCAGGTCCAGAGACAG 239
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1226 TGATCGGTCACACTCAAGAAGCAGACGTAGGTCACGCTCACGGTCCAGGTCAAGAGATAG 1285
Query 240 ACCTAGGGACTATGATCGCCAC-G-CGTCACAACCGATACTA 279
||| |||||||||||||||||| | ||||||||||| |||||
Sbjct 1286 ACCAAGGGACTATGATCGCCACAGGCGTCACAACCGCTACTA 1327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12818275995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5