BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg887916

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31170.1 | Symbols: SYCO ARATH | Cysteinyl-tRNA synthetase, ...   381    1e-105


> AT2G31170.1 | Symbols: SYCO ARATH | Cysteinyl-tRNA synthetase, 
class Ia family protein | chr2:13282355-13285645 REVERSE LENGTH=1925
Length=1925

 Score =  381 bits (206),  Expect = 1e-105
 Identities = 220/227 (97%), Gaps = 0/227 (0%)
 Strand=Plus/Plus

Query  1     GTTCTTGAGCAGCTAAAAGAGAAAGCACTAAAGCGAGCTGGACTAGAAGAGGAAGATGTG  60
             ||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct  1485  GTTCTCGAGCAGCTAAAAGAGAAGGCACTAAAGCGAGCTGGACTAAAAGAGGAAGATGTG  1544

Query  61    TTGCAGAGAGTGCAAGAGAGAACAGACGCAAGGAAAAATAAAGAATACGAAAGATCTGAT  120
             ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1545  TTGCAGAGAGTGCAAGAGAGAACAGACGCAAGGAAGAATAAAGAATACGAAAGATCTGAT  1604

Query  121   GCAATTAGGAAAGATTTGGCAAGTGTTGGGATCGCTTTGATGGATAGTCCTGAGGGAACA  180
             ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct  1605  GCAATTAGGAAAGATTTGGCAAAAGTTGGGATCGCTTTGATGGATAGTCCTGAGGGAACA  1664

Query  181   ACTTGGAGACCAGCCATTCCTCTTGCCCTTCAAGAACCTGTAACTAC  227
             |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1665  ACTTGGAGACCAGCCATTCCTCTTGCACTTCAAGAACCTGTAACTAC  1711



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10556227290


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5