BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887930
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28580.1 | Symbols: | Plant protein of unknown function (DU... 527 5e-149
> AT2G28580.1 | Symbols: | Plant protein of unknown function (DUF247)
| chr2:12244859-12248450 FORWARD LENGTH=1817
Length=1817
Score = 527 bits (285), Expect = 5e-149
Identities = 340/365 (93%), Gaps = 9/365 (2%)
Strand=Plus/Plus
Query 1 ATGTTTAAAAACAACGAGGAGAAGGAACATATATTTTCGGATCTAGAACGAGGAACAATG 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 174 ATGTTTAAAAACAACGAGGAGAAGGAACATATTTTTTCGGATCTAGAACGAGGAACAATG 233
Query 61 CTAACAAGACCTATGGGAGAAGAATATATTC-AGA--TACGGCTTTCTACAGACACAACG 117
||||||||||| ||||| |||| |||||||| | | |||||||||||| | | | |||
Sbjct 234 CTAACAAGACCAATGGGCGAAGGATATATTCAATATCTACGGCTTTCTA-A-AGA-GACG 290
Query 118 ACTCAA-C--CGGATTCTAAGATACCCGGTCTTTGGTCTTCTTCGGTTAAACCCGAGTTT 174
|||||| | ||||||||||||| |||||||||||||||||||| |||| ||| ||||||
Sbjct 291 ACTCAACCGGCGGATTCTAAGATTCCCGGTCTTTGGTCTTCTTCCGTTAGACCAGAGTTT 350
Query 175 TGTTGCATCTATAGAGTACCAGACCGGTTACGCAAAGTGAACCCCGAGGCTTACACTCCT 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TGTTGCATCTATAGAGTACCAGACCGGTTACGCAAAGTGAACCCCGAGGCTTACACTCCT 410
Query 235 CAAATGCTGCTAATCGGACCTCTTCACCATTCCAAGAAAGTTGAAGCCTTCAAGCGCTAT 294
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 411 CAAATGCTGCTAATCGGACCTCTTCACCATTCCAAGAAAGCTGAAGCCCTCAAGCGCTAC 470
Query 295 AAAACCGAGTTAAGATATTTGAACTATCTCAACATGGAGCTTCACAAGAAGAAGTGCCTT 354
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 471 AAAACCGATTTAAGATATTTGAACTATCTGAACATGGAGCTTCACAAGAAGAAGTGCCTT 530
Query 355 GATAG 359
|||||
Sbjct 531 GATAG 535
Score = 364 bits (197), Expect = 4e-100
Identities = 222/234 (95%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 359 GAAGTACTCTAAACTTCAGCAAGAAAGAAGATATTCTTTTCAACCAGAGTCGTCTCATAA 418
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 712 GAAGTACCCTAAACTTCAACAAGAAAGAAGATATTCTTTTCAACCAGAGTCGTCTCATAA 771
Query 419 ACTCTACCGCCATTTTAGAAGATCTAATCTTGCTCGAGAACCAACTTCCTTATGCCCTTT 478
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 772 ACGCTACCGCCATTTTAGAAGATCTAATCTTGCTCGAGAACCAACTCCCTTATGCCCTTT 831
Query 479 TAGAGAAACTCTTTGAACCTTTTTTCTCAAATCTTGATACTAAGGAAACGTTTCGTGACA 538
|||||||||||||||||||||||| ||||||| | |||||||||||||||||||||| |
Sbjct 832 TAGAGAAACTCTTTGAACCTTTTTCCTCAAATGTCAATACTAAGGAAACGTTTCGTGATA 891
Query 539 TTACCCTTCGAGCTTTT-GGCTTCGAGGGAAAGATCAAAGAAGAAGTGAGATTC 591
||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 892 TTACCCTTCGAGCTTTTAGGTTT-GAGGGAAAGATCAAAGAAGAAGTGAGATTC 944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28733932084
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5