BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887931
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30890.1 | Symbols: | Cytochrome b561/ferric reductase tran... 1153 0.0
AT2G30900.1 | Symbols: TBL43 | TRICHOME BIREFRINGENCE-LIKE 43 |... 374 9e-103
> AT2G30890.1 | Symbols: | Cytochrome b561/ferric reductase transmembrane
protein family | chr2:13147621-13149819 FORWARD
LENGTH=1083
Length=1083
Score = 1153 bits (624), Expect = 0.0
Identities = 728/778 (94%), Gaps = 8/778 (1%)
Strand=Plus/Plus
Query 1 ATGGAGATTCACCATCACCTCTTCGTCTTTCTCCTCCTCCTCCTTCTTCCCCTATGCACC 60
||||||||||| ||||| ||||| |||| ||||||| ||||||| |||||||||||| ||
Sbjct 154 ATGGAGATTCATCATCAACTCTTAGTCTCTCTCCTCTTCCTCCTCCTTCCCCTATGCTCC 213
Query 61 TCCCAAGAAAATACCAGAAGCTTGGCCATTGATGTCAATGGTCAAGTCGAAACAAGTCTT 120
||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 214 TCCCAAGAAAACACCAGAAGCTTGGCCATTGATGTCAATGGTCCAGTCGAAACTTCTCCT 273
Query 121 ATCTCCGAGAAACTAAATCCAAAGCTTGTGTACGAAATCAAAGTGCATGGATTTATGCTT 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 274 ATCTCCGAGAAACTAAATCCAAAGCTTGTGTACGAAATCAAAGTGCATGGCTTTATGCTT 333
Query 181 TGGGCATCGATGGGTGTTTT-ACTGCCAATTGGTATAATCTCCATCAGATTAATATCTAT 239
|||||| ||||||||||||| | ||||||||||||||||||||||||||||||| |||||
Sbjct 334 TGGGCAGCGATGGGTGTTTTGA-TGCCAATTGGTATAATCTCCATCAGATTAATGTCTAT 392
Query 240 CAAAGACCAACCTATAATCACTCTTCGACGACTGTTCTTTCTTCATGTCATTTCTCAGAT 299
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 393 CAAAGACCAACCTATAATCACTCTTCGACGACTCTTCTTTCTTCATGTCACTTCTCAGAT 452
Query 300 GGTTGCAGTGATACTTGTGACAATAGGGGCAATAATGTCGATTAA-AAACTTCAACAATT 358
||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||
Sbjct 453 GGTTGCAGTGATACTTGTGACAATAGGGGCAGTAATGTC-AGTAATAAACTTCAACAATT 511
Query 359 CCTTCAATAATCATCACCAACAGCTTGGAATTGGACTTTACG-CTATTGTATGGTTCCAA 417
|||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 512 CCTTCAGTAATCATCACCAACAGCTTGGAATTGGACTTTACGTC-ATTGTATGGTTCCAA 570
Query 418 GCTCTTCTTGGCTTCCTCCGACCTCCAAGGGGAGGAAAATCTAGAAGGAAGTGGTTTGTA 477
||||||||||||||||||||||||||||| | || |||| ||||||||||||||||||||
Sbjct 571 GCTCTTCTTGGCTTCCTCCGACCTCCAAGAGAAGAAAAAGCTAGAAGGAAGTGGTTTGTA 630
Query 478 GGACATTGGATATTAGGAACATTAATTACTATTCTTGGGATGATAAACATATACACAGGT 537
|||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||
Sbjct 631 GGACATTGGATATTAGGAACATCAATTGCTATTCTTGGGATAATAAACATATACACAGGT 690
Query 538 TTACACGCTTACGCCAAAAAGACATCAACAAGTGCTAAGCTTTGGACCATACTCTTCACG 597
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 691 TTACACGCTTACGCCAAAAAGACATCAAAAAGTGCTAATCTTTGGACCATACTCTTCACT 750
Query 598 GCACAACTCGCTTCTATTGTCTTGGTCTATCTTTTTCAAGATAAGTGGTCTTATATCCAA 657
||||||||| ||| ||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 751 GCACAACTCTCTTGTATTGCCTTGGTCTATCTTTTTCAAGATAAATGGTCTTATATCCAA 810
Query 658 AGCCAAACTACATTTAACAGAAATCAATCCGTTGATCATAACAGCAACATATCAACCGCA 717
|||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 811 AGCCAAGCTACCTTTAACAGAAATCAATCCGTTGATCATAACAGCAACATCTCAACCGCA 870
Query 718 GAGACTGGACATGGAGACGGGGTCGAAGAG-GCTAAACCCGAGTTAGAGAAATGCTAA 774
|||||||| |||||| ||| |||||||||| | |||||| ||||||||||||||||||
Sbjct 871 GAGACTGGCCATGGATACGAGGTCGAAGAGAG-TAAACCGGAGTTAGAGAAATGCTAA 927
> AT2G30900.1 | Symbols: TBL43 | TRICHOME BIREFRINGENCE-LIKE 43
| chr2:13149414-13152542 FORWARD LENGTH=1707
Length=1707
Score = 374 bits (202), Expect = 9e-103
Identities = 235/251 (94%), Gaps = 2/251 (1%)
Strand=Plus/Plus
Query 525 CATATACACAGGTTTACACGCTTACGCCAAAAAGACATCAACAAGTGCTAAGCTTTGGAC 584
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1 CATATACACAGGTTTACACGCTTACGCCAAAAAGACATCAAAAAGTGCTAATCTTTGGAC 60
Query 585 CATACTCTTCACGGCACAACTCGCTTCTATTGTCTTGGTCTATCTTTTTCAAGATAAGTG 644
|||||||||||| ||||||||| ||| ||||| |||||||||||||||||||||||| ||
Sbjct 61 CATACTCTTCACTGCACAACTCTCTTGTATTGCCTTGGTCTATCTTTTTCAAGATAAATG 120
Query 645 GTCTTATATCCAAAGCCAAACTACATTTAACAGAAATCAATCCGTTGATCATAACAGCAA 704
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 121 GTCTTATATCCAAAGCCAAGCTACCTTTAACAGAAATCAATCCGTTGATCATAACAGCAA 180
Query 705 CATATCAACCGCAGAGACTGGACATGGAGACGGGGTCGAAGAG-GCTAAACCCGAGTTAG 763
||| ||||||||||||||||| |||||| ||| |||||||||| | |||||| |||||||
Sbjct 181 CATCTCAACCGCAGAGACTGGCCATGGATACGAGGTCGAAGAGAG-TAAACCGGAGTTAG 239
Query 764 AGAAATGCTAA 774
|||||||||||
Sbjct 240 AGAAATGCTAA 250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37625376103
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5