BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg887940
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06620.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 773 0.0
> AT1G06620.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:2025601-2027271
FORWARD LENGTH=1292
Length=1292
Score = 773 bits (418), Expect = 0.0
Identities = 563/626 (90%), Gaps = 37/626 (6%)
Strand=Plus/Plus
Query 1 AAAGGGTTTTACTCTCGAGATCCAGCTAGTAAGGTGGTATATAGCAGTAACTTCGATCTG 60
||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||
Sbjct 390 AAAGGGTTTTACTCTCGAGATCCAGCTAGTAAGATGGTATACAGCAGCAACTTCGATCTG 449
Query 61 TTTAGCTCACCGGCGGCGAATTGGAGAGATACACTCGGTTGTTATACGGCACCAGATCCT 120
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 450 TTTAGCTCACCGGCGGCGAATTGGAGAGATACACTTGGTTGTTATACAGCACCAGATCC- 508
Query 121 CCC-AGACCGGAGGACTTACCCGCCGCTTGT---GAGATGATGATTGAGTACTCAAAGGA 176
||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 509 CCCGAGACCGGAGGACTTACCCGCCACTTGTGGGGAGATGATGATTGAGTACTCAAAGGA 568
Query 177 AGTGATGAAATTAGGTAAATTGCTCTTTGAGCTTCTGTCAGAAGCTCTAGGGTTAAACAC 236
|||||||||||| |||||||| ||||| |||||||| || ||||||||||||||||||||
Sbjct 569 AGTGATGAAATTGGGTAAATTACTCTTCGAGCTTCTCTCGGAAGCTCTAGGGTTAAACAC 628
Query 237 TCCTCACAAATGCTCGGACCGGCACTGCATGGATTGCACCAACTCCTTGCTGTTGCTCGG 296
| |||| ||| | || | |||||||||||| ||||||||||||||||||||
Sbjct 629 TAATCAC-----CTC--A-AGG-A---CATGGATTGCACTAACTCCTTGCTGTTGCTCGG 676
Query 297 CCATTATTACCCGCCATGTCCCCAACCCGACCTTACTTTAGGTTTGACCAAACACTTCGA 356
||||||||||||||||||||||||||||||||||||| |||| || || ||||||| |||
Sbjct 677 CCATTATTACCCGCCATGTCCCCAACCCGACCTTACTCTAGGCTTAACGAAACACTCCGA 736
Query 357 CAACTCTTTTCTCACTATTCTTCTTCAAGACCATATCGGAGGGCTTCAAGTTCTCCATGA 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 737 CAACTCTTTTCTCACTATTCTTCTTCAAGACCATATCGGAGGGCTTCAAGTTCTTCATGA 796
Query 417 CCAATATTGGGTTGATGTTCCTCCTGTTCCC-GGAGCTCTTGTTGTTAACGTTGGAGATC 475
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 797 CCAATATTGGGTTGATGTTCCTCCTGT-CCCTGGAGCTCTTGTTGTTAACGTTGGAGATC 855
Query 476 TTCTTCAG-TT----CAAA--A---GT------G--TGGAGCATAGGGTTTTGGCGAATG 517
|||||||| || |||| | || | ||||||||||||||||||| ||||
Sbjct 856 TTCTTCAGCTTATAACAAACGACAAGTTCATAAGCGTGGAGCATAGGGTTTTGGCCAATG 915
Query 518 TAGCTGGACCAAGAATTTCAGTGGCTTGTTTCTTCAGTTCGTATTTGATGGCGAATCCTC 577
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 916 TAGCTGGACCGAGAATTTCAGTGGCATGTTTCTTCAGCTCGTATTTGATGGCGAATCCTC 975
Query 578 GAGTTTATGGACCCATCAAAGATATT 603
|||||||||||||||||||||| |||
Sbjct 976 GAGTTTATGGACCCATCAAAGAGATT 1001
Score = 139 bits (75), Expect = 3e-32
Identities = 81/84 (96%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 604 GACACCACCATTACGGAGTATGCAAAGTTCTACAGATCCAAAGGATTCGATGGTACCTCT 663
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 GACACTACTATTACAGAGTATGCAAAGTTCTACAGATCCAAAGGATTCGATGGTACCTCT 1091
Query 664 GGATTACTCTATCTCAAGATCTGA 687
||||||||||||||||||||||||
Sbjct 1092 GGATTACTCTATCTCAAGATCTGA 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33255005314
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5